PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1303s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 533aa    MW: 59544.4 Da    PI: 6.8532
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1303s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.4e-084534901954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          F +  ++yp+ +e+  LA + gLt +qV++WF N R +
  Kalax.1303s0006.1.p 453 FDNflHPYPKDSEKHMLAIHSGLTRSQVSNWFINARVR 490
                          5555589*****************************88 PP
2BELL57.34e-19323392272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +++++ kk +L  ll++Vd+ Y+q+   ++ v+s+F+  +g ++ ++++++ l+++S+ +++Lk++i+ qi
  Kalax.1303s0006.1.p 323 KRQVRDKKKQLTALLKMVDEGYNQCLRAVHSVVSAFHPLTGSDP-EVHARFVLQTTSFLYKSLKERISAQI 392
                          578899**************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-13256390IPR006563POX domain
PfamPF075262.5E-19265389IPR006563POX domain
PROSITE profilePS5007110.835431494IPR001356Homeobox domain
SMARTSM003894.3E-5434498IPR001356Homeobox domain
CDDcd000862.70E-9434495No hitNo description
SuperFamilySSF466894.71E-15436502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-25437500IPR009057Homeodomain-like
PfamPF059208.5E-15451490IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MHFSSYKQPF QENEMYSNMP VERPGACDGT SLRISATYPH HPPSAFDLNN QQNLMMSEYP  60
VFSAIQGEPL CISTHPVYAG SDATLAGPRL DVGNVCEEQF GEGTLVSATV LAGILASKGF  120
FHQNVDGRAF AYDDDPSTSS FNRSCNNGGE AADVWVQQPH QIIYGSSSSF DPHSTETGSC  180
HDSWAATYPR HNTLMFNSES SLSLAASQPS RICQSSISIQ DQCSELSRSG ITNQHDSGWC  240
SEQSSLANTN DLSLTYPTSQ PWPASSYLKA VQQLLTELSR FALENVDLGS YLAGSPGNVA  300
SISGEYSESD GGESQEATRS LQKRQVRDKK KQLTALLKMV DEGYNQCLRA VHSVVSAFHP  360
LTGSDPEVHA RFVLQTTSFL YKSLKERISA QILNMKAADM RSDSIQEQER AFESSFIHKQ  420
WALQQLRRKE HQLWRPQRGL PERSVSVLRA WMFDNFLHPY PKDSEKHMLA IHSGLTRSQV  480
SNWFINARVR LWKPMIEEMY AEINRRKAHR RSHVGENSVR FKAIKGLQAE PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-14440498563Homeobox protein Meis2
3k2a_B5e-14440498563Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-82homeobox gene 1