PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1302s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 698aa    MW: 76062.3 Da    PI: 6.1355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1302s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.52.8e-973336962374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsev 87 
                          ve +++++e ++ g+l laq +Larl+++ sp g+p+qR+a+yf+e L+  l  ++++   + ++  ++ ++    ++ ++ a+k fse+
  Kalax.1302s0006.1.p 333 VEDIFKAVELIQVGNLVLAQGILARLNHQLSPIGKPFQRIAFYFKESLQLLLEMNGNSSNVTTSTALSN-YSpsfgHILKIGAYKSFSEA 421
                          678999*******************************************99987333333222222222.2245679999999******* PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          sP++ f+++t+NqaIle+veg +++H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp++++  e   + e+L++fA+e++++fe
  Kalax.1302s0006.1.p 422 SPVVHFANFTCNQAILESVEGFDKIHVVDFDIGYGGQWASLMQELALRNGGTPSLKITAFASPSTHDDLEFGLVLENLNQFASEVKLKFE 511
                          ****************************************************************************************** PP

                 GRAS 178 fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ++    +l++l+   L+v++  gEa++Vnl ++  + +  ++sl+     vL++vk+lsPk+vv  ++ +d+n+ +F ++ ++al+ y+
  Kalax.1302s0006.1.p 512 LRI---GSLDALSSMPLHVSNgeGEAIVVNLPVAALSCY--PMSLPL----VLRVVKQLSPKIVVSLDRGCDRNDLPFPHHTVHALQSYT 592
                          **9...699***********9999*********999998..666666....*************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                          al++sl+a++  + ++ +k+Er+++++ i+ ++  ++       e+ + Wr+ + ++GF+p+++s+ +++qa++l+++++  g++ve+++
  Kalax.1302s0006.1.p 593 ALLESLDASV-MNLDALQKIERFFVHPGIERMLVSRHLC----PEKISPWRSIFLSSGFSPYQFSNITESQADYLVQRTPAGGFHVEKRQ 677
                          *********7.666999****************999998....9********************************************** PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           s+vl+W++++Lvs+SaWr
  Kalax.1302s0006.1.p 678 SSIVLCWQQKELVSASAWR 696
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.991306676IPR005202Transcription factor GRAS
PfamPF035149.8E-95333696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MPLPFEIEGK GVLDFEYSDS VHHHPQSELL LAAWTDKQLL EQASSCCHLL GSEPTSVLDT  60
RRSLSLSPSP PNSTSTLSSS LGSSGSGRST AVAGQEKCGV GMDEFENVLS DFGAGVAPPG  120
ATPSPDQSLL GYFFGDHDQM HDPGLVSFNK FMQGSVAPDF DMGTGMSESC STFPLCNNGS  180
VGYGSIPNAI FGQLGSNTVP VAVSQHQHQY QQLMGSFEEK PQVFNPNFAI NQHQIQPSEN  240
PSLFLPMGFG QQEHHGLILP PHPKRLNTGM MLEQGVNNLQ IPKIPFSLQN QHDPGIGHKL  300
QLHPNPPPTR FPTGMTKGRG EEALLGSHQQ AIVEDIFKAV ELIQVGNLVL AQGILARLNH  360
QLSPIGKPFQ RIAFYFKESL QLLLEMNGNS SNVTTSTALS NYSPSFGHIL KIGAYKSFSE  420
ASPVVHFANF TCNQAILESV EGFDKIHVVD FDIGYGGQWA SLMQELALRN GGTPSLKITA  480
FASPSTHDDL EFGLVLENLN QFASEVKLKF ELRIGSLDAL SSMPLHVSNG EGEAIVVNLP  540
VAALSCYPMS LPLVLRVVKQ LSPKIVVSLD RGCDRNDLPF PHHTVHALQS YTALLESLDA  600
SVMNLDALQK IERFFVHPGI ERMLVSRHLC PEKISPWRSI FLSSGFSPYQ FSNITESQAD  660
YLVQRTPAGG FHVEKRQSSI VLCWQQKELV SASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2935069621375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661679.10.0PREDICTED: scarecrow-like protein 27
SwissprotO813161e-124SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A438GXI90.0A0A438GXI9_VITVI; Scarecrow-like protein 6
STRINGVIT_15s0048g00270.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-126GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]