PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1299s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 110aa MW: 11710.9 Da PI: 7.9037 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.1 | 1e-28 | 36 | 90 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY eC++N+A+ +Gg avDGC+Efm++ g+egta+al CaAC CHR+FHRr + Kalax.1299s0003.1.p 36 SIRYMECQRNQAVVVGGFAVDGCREFMAT-GQEGTAEALICAACTCHRSFHRRVEI 90 689*************************8.999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-16 | 35 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.8E-27 | 37 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-23 | 38 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.078 | 39 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MSGRRADQGR SNGAHQGFNN GSVSTAANNM PVFSTSIRYM ECQRNQAVVV GGFAVDGCRE 60 FMATGQEGTA EALICAACTC HRSFHRRVEI HQAVNLTHSA ATDSQQNGY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408377.1 | 6e-24 | PREDICTED: mini zinc finger protein 1-like | ||||
Refseq | XP_022135253.1 | 7e-24 | mini zinc finger protein 3-like | ||||
TrEMBL | A0A444FJM1 | 2e-22 | A0A444FJM1_ENSVE; Uncharacterized protein | ||||
STRING | XP_010037168.1 | 3e-22 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 2e-23 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1299s0003.1.p |