PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1298s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 467aa    MW: 51574.8 Da    PI: 6.0138
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1298s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2861.1e-87514582373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                          ++lLl+cA a++ +d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++ +  l++s+t+ ++   + +   l  ++++ P
  Kalax.1298s0004.1.p  51 EKLLLHCASALEINDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALISRASRVCPTPMGNLNTSSTTLQRRLLSGTE--LagYVDLIP 138
                          689***************************************************9999999999998885443333344..355****** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                          +++f++ +aN+aI++av+g  r+Hi+Df+i++++QWp+L+ aLa+RpegppslRi +     ++    + ++  +g rL +fA+  ++pf
  Kalax.1298s0004.1.p 139 WHRFGFCAANSAIYKAVQGYPRIHILDFSITHCMQWPTLIYALAKRPEGPPSLRISVPCTRPHVpplLNVSIDDIGIRLGNFARCRDIPF 228
                          ********************************************************96664444789999******************** PP

                 GRAS 177 efnvl..........................vakrledleleeLrvkpgEalaVnlvlqlhrll..........desvsles.....erd 225
                          ef+v+                          +   l++l++++L+++ +E+l+Vn++  l +l+                 +      rd
  Kalax.1298s0004.1.p 229 EFDVMncssssngansiemttdnskelltfdIDFLLDCLSPHALNLRDDEVLVVNCQSWLRYLPdgqlknstshI------HeascsIRD 312
                          ************99999998887777765533336778899999*******************966666554431......023344689 PP

                 GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                          ++L+l++sl+P+++++v+++ad+ns+s+  r++ +++y +  fd+le+ lp+es++ri +E+  +g +i++++ ceg++r+er e+  + 
  Kalax.1298s0004.1.p 313 TFLELLRSLNPHIMIIVDEDADLNSTSLTSRIATCFNYLWIPFDALETFLPKESSQRIEYEAD-IGHKIESIIGCEGFHRIERLESSLNM 401
                          ***************************************************************.************************** PP

                 GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++r+++aGF +vp+se+++k++klll +++  g+ ++ ++++l+l+Wk+++ v +S W
  Kalax.1298s0004.1.p 402 SQRIKTAGFLSVPFSEETVKDVKLLLDEHA-SGWGMKRDDDALILTWKGHNSVYASTW 458
                          ******************************.899************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.62524440IPR005202Transcription factor GRAS
PfamPF035143.7E-8551458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MKTEPRGSTA PISLPSHGLL SPSSTSSSSS SNSLPGALKG CLGSLDGACI EKLLLHCASA  60
LEINDVTLAQ QVMWVLNNVA SPVGDPNQRL TSWFLRALIS RASRVCPTPM GNLNTSSTTL  120
QRRLLSGTEL AGYVDLIPWH RFGFCAANSA IYKAVQGYPR IHILDFSITH CMQWPTLIYA  180
LAKRPEGPPS LRISVPCTRP HVPPLLNVSI DDIGIRLGNF ARCRDIPFEF DVMNCSSSSN  240
GANSIEMTTD NSKELLTFDI DFLLDCLSPH ALNLRDDEVL VVNCQSWLRY LPDGQLKNST  300
SHIHEASCSI RDTFLELLRS LNPHIMIIVD EDADLNSTSL TSRIATCFNY LWIPFDALET  360
FLPKESSQRI EYEADIGHKI ESIIGCEGFH RIERLESSLN MSQRIKTAGF LSVPFSEETV  420
KDVKLLLDEH ASGWGMKRDD DALILTWKGH NSVYASTWVP NGSLRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-56184601420Protein SHORT-ROOT
5b3h_E6e-56184601420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216207.20.0scarecrow-like protein 32
TrEMBLA0A067DY510.0A0A067DY51_CITSI; Uncharacterized protein
TrEMBLA0A251Q4820.0A0A251Q482_PRUPE; Uncharacterized protein
STRINGEMJ174060.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein