PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1287s0006.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 61243.5 Da PI: 4.9535 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 447.7 | 7.8e-137 | 176 | 545 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL++cA +++g+l++a+a++++l++l+s +gdp +R+aay++e+Laar+a+s++ lykal+++e + ++++laa+++++ev+P++ Kalax.1287s0006.2.p 176 KQLLIHCASIIAEGKLREASAMITELRQLVSIQGDPHERIAAYMVEGLAARMAESGQCLYKALKCKEPP---TTDRLAAMQILFEVCPCF 262 589*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 kf++++aN I+ea+ e+rvHiiDfdi+qG Q+++L+q+LasR++ p+lRiTgv++pes+ s l+ +g rL+++Ae+l++pfef+ Kalax.1287s0006.2.p 263 KFGYMAANGVIMEAIRDEKRVHIIDFDINQGNQYITLIQTLASRKGRRPHLRITGVDDPESVqrSVGGLKIIGLRLEQLAEALELPFEFH 352 ************************************************************9989999*********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + va++++d+++++L+ +p+E+l+Vn+++qlh+++desvs+ ++rd++L+ +k+l Pk+v+vveq++++n+++F+ rf+ea +yysa+f+ Kalax.1287s0006.2.p 353 A-VASATSDVTPDMLDHRPDEVLIVNFAFQLHHMPDESVSTVNQRDQLLRKIKGLHPKLVTVVEQDVNTNTSPFFPRFIEAYNYYSAVFE 441 *.7*************************************************************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 sl+a+l+r+s++ri+vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+++p+s++++++++ l+rk+ ++ y+++e+ g+l+ Kalax.1287s0006.2.p 442 SLDATLARDSQDRINVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSLPVSQSVQESIRNLIRKYCDR-YKMKEDLGALL 530 ****************************************************************************66.*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 +gW+d++L+++SaWr Kalax.1287s0006.2.p 531 FGWEDKNLIVASAWR 545 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.612 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-134 | 176 | 545 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MSLVRRVEPS GTSRASRNIY SVADKQRLKQ TNRSSSSNSF ETNYLLDSPM EAQPAIVGVS 60 RNELQISSAA YPLKIAATSA ATQNNFASEY MENEISDSAE FDAETMRLKL QELEALLCDN 120 NFEGCDVDQD MELDGGWDNS ICNDLLQESP KESTSSSLSI ISSDKELSPA PFRTPKQLLI 180 HCASIIAEGK LREASAMITE LRQLVSIQGD PHERIAAYMV EGLAARMAES GQCLYKALKC 240 KEPPTTDRLA AMQILFEVCP CFKFGYMAAN GVIMEAIRDE KRVHIIDFDI NQGNQYITLI 300 QTLASRKGRR PHLRITGVDD PESVQRSVGG LKIIGLRLEQ LAEALELPFE FHAVASATSD 360 VTPDMLDHRP DEVLIVNFAF QLHHMPDESV STVNQRDQLL RKIKGLHPKL VTVVEQDVNT 420 NTSPFFPRFI EAYNYYSAVF ESLDATLARD SQDRINVERQ CLARDIVNIV ACEGEERIER 480 YEVAGKWRAR MMMAGFTSLP VSQSVQESIR NLIRKYCDRY KMKEDLGALL FGWEDKNLIV 540 ASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-62 | 182 | 544 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-62 | 182 | 544 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023871722.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_023871723.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_023871724.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_023871725.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_023871726.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2N9FGS3 | 0.0 | A0A2N9FGS3_FAGSY; Uncharacterized protein | ||||
STRING | XP_010104285.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1287s0006.2.p |
Publications ? help Back to Top | |||
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