PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1281s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 241aa MW: 26186.1 Da PI: 7.6516

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1281s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.7e-32	52	107	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhA+ +Ggha+DGCgEf+++ ge+gt ++l+CaAC+CHRnFHR+e++ e Kalax.1281s0001.1.p 52 VRYRECLKNHAVGIGGHALDGCGEFIAA-GEDGTLESLTCAACNCHRNFHRKETDGE 107 89***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-29	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.6E-30	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-21	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.489	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.1E-18	166	239	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-30	169	239	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.0E-26	178	235	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDQFGHDHQH GEEMEEEEMV PPHESLTGLR RLNVSGEGGS SGAGSGRRAP LVRYRECLKN 60 HAVGIGGHAL DGCGEFIAAG EDGTLESLTC AACNCHRNFH RKETDGESAF HPNAQFSPYY 120 HRSPPPGFLH MALPPSRRPL TLPSREEHDD MSNPSSSGGG GVGGGGRGAG STPGGGSKKR 180 FRTKFTAEQK ERMMELAERL GWRLQRQDDA LVQQFCAENG LSRQVLKVWM HNNKNTLGKK 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	177	236	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266504.1	1e-77	PREDICTED: zinc-finger homeodomain protein 1-like
Refseq	XP_012450172.1	1e-77	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	3e-69	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1U8AKJ6	2e-76	A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like
STRING	XP_010266504.1	4e-77	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-67	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Kalax.1281s0001.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]