PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1258s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 646aa    MW: 70653.7 Da    PI: 5.7925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1258s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30374432259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Kalax.1258s0007.1.p 374 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 432
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109368434IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30370434IPR003657WRKY domain
SuperFamilySSF1182904.97E-26371434IPR003657WRKY domain
SMARTSM007741.4E-37373433IPR003657WRKY domain
PfamPF031061.6E-25375432IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MCSYIGMCSS NHSSFYGLPR QGNGVVEDDQ EWHHQGDLAY MVGSVSGART RLFSDSSSNW  60
TQPQHLTTDN NDSIITDHQV LLTAAAQEIY PFFTFHRDQL QQPAGCFVCP SGHPSDVDDF  120
GGDPFSSIMI RDPLLRDDDM MIKRMNCSSN NHVYYSNNSN ASNNTANSLL PTTANSMMLM  180
ITKSKGFLAD AAGSESSHLF CSSSATEDIS SIIPYSSSCR TIGDHELQEA TQCHEPAAAT  240
TTSSSMISRP NSVVFSQTLQ ISPDLVSQAP LPAPPSTDNK LPISAPHVET LPLKKLAPAS  300
SSLFAVFGGS GDFDSSTNRV LDKIRTANTD TGTLHISPPR NTAIKRRKSL SKKVVCIPAP  360
APVNSRPSGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM  420
LVITYTSEHN HPWPTQRNAL AGSTRSQPSK NDISTYPGSN TSQAGTSLLQ EHNKCNNMEE  480
NEKHMGDEPA DANQMISRHI NNEKVTTTSG LVVVMSSPSI AASDTSIKEE LLGDDDHVVG  540
DQNDSNNQQD RDDDCDASHQ LYPTAGATYK YHSNDDNEHW CSDKIYRPSI GDLHVDGNYQ  600
QAPVEQSQDD FFADLGEIAR KNAFSYLDWP SPEHKTASTG PQHDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24348435280Disease resistance protein RRS1
5w3x_D3e-24348435280Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-64WRKY DNA-binding protein 35