PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1258s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 212aa MW: 23575.3 Da PI: 10.1556

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1258s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.1	2.2e-31	118	174	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e ++ ++srkpylheSRh hAlrR+Rg+gGrF Kalax.1258s0001.1.p 118 EEPVFVNAKQYHGILRRRQSRAKAESEYRV-ARSRKPYLHESRHLHALRRARGCGGRF 174 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-35	116	177	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.117	117	177	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-27	119	174	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	120	142	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	122	142	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	151	174	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTSSVHHYSV HTKKVCADHN DQTVGQKKQS DHRIQIAAAG TGISLHDATN NANVQFPAPS 60 HLGVGHAQAA YPYPDPYYRS IFVSQEAQPY SHQSMVHMHL MGIKQAGLPL PSEADAVEEP 120 VFVNAKQYHG ILRRRQSRAK AESEYRVARS RKPYLHESRH LHALRRARGC GGRFLNATKN 180 ENDKQKESTS ASNLQENMNF TNTRKGNALS P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	117	182	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655736.1	4e-74	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	4e-52	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	D7TKH6	1e-72	D7TKH6_VITVI; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	2e-73	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-46	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Kalax.1258s0001.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]