PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1256s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 480aa MW: 52854.9 Da PI: 6.2763

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1256s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	43.3	5e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ +TplWR+gp ++ LCnaCG ++r kg+ Kalax.1256s0001.1.p 7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGS 41 99************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	6.3E-7	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.85E-10	5	45	No hit	No description
CDD	cd00202	1.45E-13	6	54	No hit	No description
Pfam	PF00320	7.5E-12	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.976	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.2E-11	7	41	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYAPLHA RAEPDDFVDP 60 KESRIKIAYG QYKEPGSLKR KRTYENAVNG SIASIYNDSF WKAMDDDASN RSSSGSAGSN 120 SESYAYFGTT YDNKLTGPTR SVLVDRMKPA QKRTCIPRPK PSSIATLTKA LCTILHQQQS 180 SGFSEEDLLF ESDRSMFSGE TGHGSYLIRD TSSLTREEDS EATSFSADNK SILGSETCSS 240 PKELLVHTSC KSVKFHTEGH EKAERNTVQS GMSEIAGSQG FPLTTINLKD VLNHEEFLRH 300 LTDKEQEQLL KCLPCVDYSS LRSLFDGSHF VDSFSTSHRL ITEGVSNASL PGVRSDDCST 360 FDRLALCNLI KSKSVELFNV MKKWKHHIAA SAGYSETLVK APKPVWKEKM ETDDIDNDSA 420 CSSPRNLLAL SSDCYPYMLD SSSYGDENCD QDLLLDVPSN SPFPEAELIS STPKFWHSG*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYAPLHA RAEPDDFVDP  60
KESRIKIAYG QYKEPGSLKR KRTYENAVNG SIASIYNDSF WKAMDDDASN RSSSGSAGSN  120
SESYAYFGTT YDNKLTGPTR SVLVDRMKPA QKRTCIPRPK PSSIATLTKA LCTILHQQQS  180
SGFSEEDLLF ESDRSMFSGE TGHGSYLIRD TSSLTREEDS EATSFSADNK SILGSETCSS  240
PKELLVHTSC KSVKFHTEGH EKAERNTVQS GMSEIAGSQG FPLTTINLKD VLNHEEFLRH  300
LTDKEQEQLL KCLPCVDYSS LRSLFDGSHF VDSFSTSHRL ITEGVSNASL PGVRSDDCST  360
FDRLALCNLI KSKSVELFNV MKKWKHHIAA SAGYSETLVK APKPVWKEKM ETDDIDNDSA  420
CSSPRNLLAL SSDCYPYMLD SSSYGDENCD QDLLLDVPSN SPFPEAELIS STPKFWHSG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453142.1	1e-148	GATA transcription factor 26 isoform X2
TrEMBL	B9N2W6	1e-147	B9N2W6_POPTR; Uncharacterized protein
STRING	POPTR_0003s08080.1	1e-147	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-88	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Kalax.1256s0001.1.p