PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1249s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 480aa MW: 51893.8 Da PI: 9.8883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Kalax.1249s0009.1.p 74 FICEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00056 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Kalax.1249s0009.1.p 151 WKCDKCSKKYAVQSDWKAHSKTC 173 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 73 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.88E-7 | 73 | 96 | No hit | No description |
SMART | SM00355 | 0.022 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.7E-5 | 74 | 96 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.88E-7 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MQHHMLSSSD DAFSIPNPSI RGFPPLQEND PNQNPKIDPN PVSNKKKRNL PGTPDPDAEV 60 IALSPKSLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEI PKKKVYICPE 120 KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYKC 180 DCGTLFSRKD SFITHRAFCD ALTEESARFA AQAASNNLSF RNDHTMLSDL GNGNNPQQLN 240 LPSGFGSSTG YPNQDISSIS QFDSVFRPDN FNGMSDQMFG VGGSSGGLFG SSSSSMPDFG 300 QLPTSTSASL SLSSTSIMSQ TLMKPELLRN NSNINKTHTN MLVGTSSLYS SDTKTDKSPH 360 PSAAMSATAL LQKAAQMGST RSTAAAAASN PFFGNNNTNN AATIPALLSS SSTSSRPSNI 420 SLNSLRPDNL RNNLTRDFLG ISNGDAQASG SSNPFSPNEL AKFAASAAAT GFTQFAGNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-38 | 147 | 211 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 9e-38 | 147 | 211 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619709.1 | 1e-154 | zinc finger protein JACKDAW-like | ||||
Swissprot | Q700D2 | 1e-128 | IDD10_ARATH; Zinc finger protein JACKDAW | ||||
TrEMBL | A0A2C9VC91 | 1e-152 | A0A2C9VC91_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032876m | 1e-153 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03150.1 | 1e-102 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1249s0009.1.p |
Publications ? help Back to Top | |||
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