PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1245s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 511aa MW: 55145.1 Da PI: 6.2792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.4e-16 | 287 | 333 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L A+eY+ksLq Kalax.1245s0002.1.p 287 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 333 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.19E-20 | 281 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.987 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-17 | 286 | 337 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-21 | 287 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-13 | 287 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-17 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MANHCVPDFN MDDEYPIPSS SAPFRPSRKS SMQEDEVMEL LWQNGQIVMQ RAGSKPQQPR 60 PTFPVASGEA RDPPAPPPLF IHEDEMASWL HYPLDDPSFD RDFCTDLLYP SVSCADTAVT 120 DPIPETRPPP PPLPPPSRPP IPPARTQGFG HFSRLRPRHE AGPSKAGDGS VSVTVVESNV 180 TPAAAPPESR ESQAAGDVGG GGRGLVAGSS SVGGGLETTS LDFTVASSSG ASGAEPDFKP 240 SATEDKKRKG READDTECHS QEAVPEAADA KKQVRGSTAK RTRAAEVHNL SERRRRDRIN 300 EKMKALQELI PRCNKSDKAS MLDDAIEYLK SLQMQVQMMS MGCGMVPMMF PGMQQYMQPM 360 GMGLGVDPNR PVMPFPMATP THLAPRFPVP SYNHLPLPPF VTNAASRIQV NNPASMLNPV 420 GTQNANLVQV HPMAAQYQPY LGYQTMSMQP SQIEVMATQN ARKPNHSTGP ETTEEPQPDD 480 HGGVGSGLRV DKPAGRQLPH TASHSSVLTC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 296 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022771394.1 | 1e-129 | transcription factor PIF1-like isoform X2 | ||||
TrEMBL | A0A2R6PQ62 | 1e-130 | A0A2R6PQ62_ACTCH; Transcription factor like | ||||
STRING | EOX94041 | 1e-122 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 4e-59 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1245s0002.1.p |