PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1240s0007.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 499aa MW: 55863.8 Da PI: 7.7502

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1240s0007.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	6e-49	30	157	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ Kalax.1240s0007.2.p 30 MPGFRFHPTEEELVEFYLRRKVEGKRFTV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 118 79***********************99.89***********888889********************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s +++ +glkktLvfy+g+apkg +t+W+m+eyrl Kalax.1240s0007.2.p 119 IRSDnlSRSSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 157 98777888***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-55	28	183	IPR003441	NAC domain
PROSITE profile	PS51005	55.624	29	184	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	31	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MNEPVNDEQR PIEQQEDQEE VGDRQQEMVM PGFRFHPTEE ELVEFYLRRK VEGKRFTVEL 60 ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR 120 SDNLSRSSIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPHH ETEKHHKQHQ HQQAEISLCR 180 VYKRAGVEDH PSLVRSLPST SSMRPSSTSS SSRGSGQSSN SDRRKHSTNN NQFAAASMGR 240 SNAFQAAFGA SVGLLSSHHH HQQHLFIVNN CSMANDATTD GSSSNTTATT TDNVTTTLRL 300 SKIKNGSSTA INPPAAADAA LSKDNDSYCL TPIGGIAAAV FPSSSSSVLG LLLAEEAHHH 360 MHHQDKMNML IPSPNHHYAD DTSSSISKTQ FAGASSAPML INKPYHGDDI NSDDELHKLV 420 LNYHHQQPPN QQLIQFHNSH NNLHIHHNPT TNQFPSVMLP SQSHLLSFSN SLRGTSWNPI 480 ISEASRSGYD INNNSQFK*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MNEPVNDEQR PIEQQEDQEE VGDRQQEMVM PGFRFHPTEE ELVEFYLRRK VEGKRFTVEL  60
ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
SDNLSRSSIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPHH ETEKHHKQHQ HQQAEISLCR  180
VYKRAGVEDH PSLVRSLPST SSMRPSSTSS SSRGSGQSSN SDRRKHSTNN NQFAAASMGR  240
SNAFQAAFGA SVGLLSSHHH HQQHLFIVNN CSMANDATTD GSSSNTTATT TDNVTTTLRL  300
SKIKNGSSTA INPPAAADAA LSKDNDSYCL TPIGGIAAAV FPSSSSSVLG LLLAEEAHHH  360
MHHQDKMNML IPSPNHHYAD DTSSSISKTQ FAGASSAPML INKPYHGDDI NSDDELHKLV  420
LNYHHQQPPN QQLIQFHNSH NNLHIHHNPT TNQFPSVMLP SQSHLLSFSN SLRGTSWNPI  480
ISEASRSGYD INNNSQFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	31	184	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	31	184	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	31	184	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	31	184	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	31	184	22	168	NAC domain-containing protein 19
3swm_B	2e-53	31	184	22	168	NAC domain-containing protein 19
3swm_C	2e-53	31	184	22	168	NAC domain-containing protein 19
3swm_D	2e-53	31	184	22	168	NAC domain-containing protein 19
3swp_A	2e-53	31	184	22	168	NAC domain-containing protein 19
3swp_B	2e-53	31	184	22	168	NAC domain-containing protein 19
3swp_C	2e-53	31	184	22	168	NAC domain-containing protein 19
3swp_D	2e-53	31	184	22	168	NAC domain-containing protein 19
4dul_A	2e-53	31	184	19	165	NAC domain-containing protein 19
4dul_B	2e-53	31	184	19	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009355400.1	1e-117	PREDICTED: NAC domain-containing protein 35 isoform X1
Refseq	XP_009355401.1	1e-117	PREDICTED: NAC domain-containing protein 35 isoform X2
TrEMBL	A0A2C9VPE6	1e-114	A0A2C9VPE6_MANES; Uncharacterized protein
STRING	XP_009355400.1	1e-117	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-95	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Kalax.1240s0007.2.p