PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1229s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 776aa    MW: 85448.5 Da    PI: 5.4189
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1229s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-2098153156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kalax.1229s0007.1.p  98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 153
                          688999***********************************************999 PP
2START208.33e-652935141206
                          HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          ela +a++el+++a+ +ep+Wv s+     + +n+de+ ++f +  +     + +ea+r+++vv m++a+lve+l++ + qW  ++    
  Kalax.1229s0007.1.p 293 ELAVAAMEELLRMAQMSEPLWVPSAdgsgsSLLNEDEYNRIFHRCIGptpdgFISEASRDTAVVMMNHANLVEILMEAN-QWMSMFSaii 381
                          57899**********************999999*********9888899*99***************************.********** PP

                          .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           +a+tlevis+g      galq+m+ae+q+ +plvp R+ +fvRy++q+g+g+w++vdvS+d  ++ p    v+R++++pSg+li++ +n
  Kalax.1229s0007.1.p 382 sRAMTLEVISTGvaesfnGALQVMTAEMQLATPLVPtREIYFVRYCKQHGDGVWAVVDVSLDTLRPSP----VARCRKRPSGCLIQEIPN 467
                          ******************************************************************98....7***************** PP

                          CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          g+skvtwve+v+++ r +h+l+++lv+sgla+ga++wv tl+rqce+
  Kalax.1229s0007.1.p 468 GYSKVTWVENVEVDVRGVHNLYKPLVNSGLAFGARRWVGTLDRQCER 514
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2280153IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2082155IPR009057Homeodomain-like
PROSITE profilePS5007117.23295155IPR001356Homeobox domain
SMARTSM003898.2E-2096159IPR001356Homeobox domain
CDDcd000862.79E-1998156No hitNo description
PfamPF000464.4E-1898153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084843.177284517IPR002913START domain
SuperFamilySSF559617.55E-36286516No hitNo description
CDDcd088751.10E-118288513No hitNo description
SMARTSM002342.5E-56293514IPR002913START domain
PfamPF018522.0E-54294514IPR002913START domain
Gene3DG3DSA:3.30.530.204.1E-7389512IPR023393START-like domain
SuperFamilySSF559614.71E-21532767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MLPATMIGIN GDNINNVDSF VNSSLGQMNM FQQNLLMDPQ QPYHHSLDMM NPNNMNTHSN  60
GLETDHLNDF ESKSGSENLE GVSGDDQTDP NQQPNKKKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTQLRNENEK LRAENMRYRE  180
ALANASCPQC GGPTAIGEMS FDEHQLRLEN ARLREEVDKI SAIAAKYVGK PLNNHSSPLL  240
SPPVPSRSLE LAFPFSGEAT MRGGEMLGPA SDHLIRSISE QQPIEADKPV IVELAVAAME  300
ELLRMAQMSE PLWVPSADGS GSSLLNEDEY NRIFHRCIGP TPDGFISEAS RDTAVVMMNH  360
ANLVEILMEA NQWMSMFSAI ISRAMTLEVI STGVAESFNG ALQVMTAEMQ LATPLVPTRE  420
IYFVRYCKQH GDGVWAVVDV SLDTLRPSPV ARCRKRPSGC LIQEIPNGYS KVTWVENVEV  480
DVRGVHNLYK PLVNSGLAFG ARRWVGTLDR QCERLASSMA TYIPNGEEVF TNDEGRRNMM  540
KLADRMVMSF SAGVSASITH TWTTLSGTGA DDVRVMTRKS IDDPGRPPGI VLSAATSFWI  600
AVPPSRVFDF LRDENHRSQW DILCDGGVVH EMAHIANGRE AGNCISLLRV NGANANQSNM  660
LVLQESCTEA TASFVIYAPV DFGAMNSVLS GGDPEYVPLL PSGFAIYPDG PVGQRGHGEA  720
VGPKGAGGSL LTVAFQILVD SQPAAKLSLG SVATVNQLIS STVERIKEAL TGESS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109517.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLW9SD580.0W9SD58_9ROSA; Homeobox-leucine zipper protein HDG2
STRINGXP_010109517.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2