PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1210s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 271aa MW: 31258.3 Da PI: 7.5022

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1210s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.7	1.1e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtfskRr+g++KK +ELSvLCda++ +iifsstgk +ey++ Kalax.1210s0004.1.p 10 RIENKTTRQVTFSKRRKGLMKKTHELSVLCDAQIGLIIFSSTGKKFEYCT 59 8***********************************************96 PP
2	K-box	66	1.4e-22	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+ + + ++e +++k+e++ L++++R + Ge+L+ L++++L+qLeq+Le s++kiR++Kn+l+ +q+++l +k + l++en +Lr + Kalax.1210s0004.1.p 80 PEHDNRDEICKEWRRIKAETSALEQNLRLYNGEGLSFLTHQNLEQLEQHLEYSVNKIRARKNQLFEQQMDNLERKVQLLDQENSKLRDFI 169 566778899*****************************************************************************9755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.572	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.26E-40	2	78	No hit	No description
SuperFamily	SSF55455	1.19E-30	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.7E-20	81	167	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.428	85	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0019252	Biological Process	starch biosynthetic process
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0048316	Biological Process	seed development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGRGKVEIRR IENKTTRQVT FSKRRKGLMK KTHELSVLCD AQIGLIIFSS TGKKFEYCTD 60 PLSMGHIIDE YLKCTGKRIP EHDNRDEICK EWRRIKAETS ALEQNLRLYN GEGLSFLTHQ 120 NLEQLEQHLE YSVNKIRARK NQLFEQQMDN LERKVQLLDQ ENSKLRDFIR EHETMGYQFH 180 DHQQVPGLEW KAPAAQAHLQ IQDNVRSSEL IDHRHQLMPF PAGNPELGGS GADNNDHSTA 240 LQLAHLNNSF HHPQVHSEPV SALSDRLLTL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-18	1	62	1	62	MEF2C
5f28_B	5e-18	1	62	1	62	MEF2C
5f28_C	5e-18	1	62	1	62	MEF2C
5f28_D	5e-18	1	62	1	62	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9ATE5	4e-60	FBP24_PETHY; MADS-box protein FBP24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	8e-54	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Kalax.1210s0004.1.p

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]