PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1200s0014.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 188aa MW: 20836.3 Da PI: 5.3091

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1200s0014.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	202.5	1.7e-62	6	173	2	168
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +q+CyvqC+fC til+vsvP +sl+++vtv+CGhC sllsvn++kas + la+ ++++ +++ +++++ ++ + n + Kalax.1200s0014.2.p 6 NIFDLQDQICYVQCGFCATILLVSVPCSSLSNTVTVKCGHCNSLLSVNMMKASfvplNFLASLTQIEQLVQQ----KEESSADESRANAT 91 578999******************************************9995554455666654443333....33333333333333 PP YABBY 88 keesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 k++ ++ s s+ +++++++++ +++PPekrqr+Psayn fikeei+r+k ++P +sh+eafs+aaknWa fP++ + Kalax.1200s0014.2.p 92 KTTDQKLSPSTGPSsDTEDEDDTSINNAINKPPEKRQRAPSAYNHFIKEEIKRLKKEDPTMSHKEAFSTAAKNWANFPNMRH 173 33333333333333033444444445679***********************************************9864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-61	11	172	IPR006780	YABBY protein
SuperFamily	SSF47095	8.77E-9	118	170	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-6	122	171	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSAFSNIFDL QDQICYVQCG FCATILLVSV PCSSLSNTVT VKCGHCNSLL SVNMMKASFV 60 PLNFLASLTQ IEQLVQQKEE SSADESRANA TKTTDQKLSP STGPSSDTED EDDTSINNAI 120 NKPPEKRQRA PSAYNHFIKE EIKRLKKEDP TMSHKEAFST AAKNWANFPN MRHKGSEESY 180 DQAERDM*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022775586.1	1e-77	axial regulator YABBY 4-like
Swissprot	Q9LDT3	6e-61	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A396HWH4	2e-75	A0A396HWH4_MEDTR; Putative transcription factor C2C2-YABBY family
TrEMBL	A0A438E6L5	2e-75	A0A438E6L5_VITVI; Axial regulator YABBY 4
STRING	XP_008221876.1	5e-76	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-56	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.1200s0014.2.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]