PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1200s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 255aa MW: 28498.5 Da PI: 8.8025 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 184.2 | 7.1e-57 | 6 | 165 | 2 | 160 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +q+CyvqC+fC til+vsvP +sl+++vtv+CGhC sllsvn++kas + la+ ++++ +++ +++++ ++ + n + Kalax.1200s0014.1.p 6 NIFDLQDQICYVQCGFCATILLVSVPCSSLSNTVTVKCGHCNSLLSVNMMKASfvplNFLASLTQIEQLVQQ----KEESSADESRANAT 91 578999********************************************9995554455666654443333....33333333333333 PP YABBY 88 keesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 k++ ++ s s+ +++++++++ +++PPekrqr+Psayn fikeei+r+k ++P +sh+eafs+aakn Kalax.1200s0014.1.p 92 KTTDQKLSPSTGPSsDTEDEDDTSINNAINKPPEKRQRAPSAYNHFIKEEIKRLKKEDPTMSHKEAFSTAAKNV 165 33333333333333033444444445679********************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-55 | 11 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-6 | 118 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.5E-4 | 122 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSAFSNIFDL QDQICYVQCG FCATILLVSV PCSSLSNTVT VKCGHCNSLL SVNMMKASFV 60 PLNFLASLTQ IEQLVQQKEE SSADESRANA TKTTDQKLSP STGPSSDTED EDDTSINNAI 120 NKPPEKRQRA PSAYNHFIKE EIKRLKKEDP TMSHKEAFST AAKNVRFYKL EAQFSKVLLV 180 TQNQLKPSVT FFSGQTSLIC GTRGVKRAMI RQKGTCDGSK GLVSVEELDD ITSRRWLFKI 240 RFRFYVFQQF RICG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221876.1 | 5e-69 | PREDICTED: axial regulator YABBY 4 | ||||
Refseq | XP_021692542.1 | 7e-69 | axial regulator YABBY 4 isoform X1 | ||||
Swissprot | Q9LDT3 | 2e-54 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | M5XQH8 | 5e-67 | M5XQH8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221876.1 | 2e-68 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-50 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1200s0014.1.p |
Publications ? help Back to Top | |||
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