PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1197s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 33838.6 Da PI: 9.0361 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 45 | 105 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke++l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kalax.1197s0007.1.p 45 KEQSLPCPRCNSTNTKFCYYNNYSLSQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 105 57899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 43 | 94 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 47 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MNAAQWKQEI VLKPVGDICS SSKANNTTGV DGGKKAAGTV VRPPKEQSLP CPRCNSTNTK 60 FCYYNNYSLS QPRYFCKGCR RYWTEGGSLR NIPVGGGSRK NKRSPSSSSA PPGVASKKLF 120 VHPSSLQNPN IMIHQPERAG NDLNLSFPQQ HQEYRSISDF VHLPNTSSQT TAPTAATSHL 180 SALELLTGMT SRGVGVGGFS NCFMPISDPD SVYPSASFSN FMHDFKPPAL NFSLDNRLGI 240 GPSGGGAFGS MTTHNDEIST RGGGGIRVLA SPFDDLKSHQ ADDHQHQQQA DQNRGHGVVS 300 TGYWTGMIGG GGGSDW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439815.1 | 3e-75 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
TrEMBL | A0A0D2U9N9 | 6e-74 | A0A0D2U9N9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G256800.1 | 7e-71 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1197s0007.1.p |