PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1197s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 431aa MW: 46079.8 Da PI: 8.4879

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1197s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2.1e-29	56	106	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Kalax.1197s0001.1.p 56 EKTISLDVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 106 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	45	126	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-27	58	106	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-20	328	420	No hit	No description
SMART	SM00666	1.1E-23	335	417	IPR000270	PB1 domain
PROSITE profile	PS51745	22.682	335	417	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-22	336	417	No hit	No description
CDD	cd06407	4.33E-34	336	416	No hit	No description
Pfam	PF00564	8.2E-20	336	416	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MVAAWDRETG NKVSSAKLVS EKTNGSNNAI NTAAVGGDLV GNTVTKKPER KRGKTEKTIS 60 LDVLQQYFSG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV 120 QGSDSAFGLS SLSPASLPAA GCSISWAANT NGSDRPNSPG LRTTELQGMR SELPECKSPV 180 SDGKAGNGVH SPGSKTFDHE GSAHEHIPKV SKTRSGSREG SAGSPTSHGS CQGSAHETNV 240 AQDYVKCGAP LTNLVMANFM PDTRLSTQVQ GPFEGLKVAD VGSSKDLRNL CPSIADAHIE 300 DRLPECSWTN PQIPIPALEP TTAANPASSR ENSATLTIKA TYKDDIIRFR FLSNSRIVEL 360 REEVAKRLKL EVGTFDIKYL DEDQELVLVV CDADLRECLE VSRSSGSLMV RLSVHDVTTN 420 LGSSCESTGV *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MVAAWDRETG NKVSSAKLVS EKTNGSNNAI NTAAVGGDLV GNTVTKKPER KRGKTEKTIS  60
LDVLQQYFSG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV  120
QGSDSAFGLS SLSPASLPAA GCSISWAANT NGSDRPNSPG LRTTELQGMR SELPECKSPV  180
SDGKAGNGVH SPGSKTFDHE GSAHEHIPKV SKTRSGSREG SAGSPTSHGS CQGSAHETNV  240
AQDYVKCGAP LTNLVMANFM PDTRLSTQVQ GPFEGLKVAD VGSSKDLRNL CPSIADAHIE  300
DRLPECSWTN PQIPIPALEP TTAANPASSR ENSATLTIKA TYKDDIIRFR FLSNSRIVEL  360
REEVAKRLKL EVGTFDIKYL DEDQELVLVV CDADLRECLE VSRSSGSLMV RLSVHDVTTN  420
LGSSCESTGV *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021300049.1	1e-146	protein NLP7 isoform X2
Swissprot	Q84TH9	1e-96	NLP7_ARATH; Protein NLP7
TrEMBL	A0A061G5G4	1e-142	A0A061G5G4_THECC; Transcription factor, putative
STRING	EOY25090	1e-143	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-96	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Kalax.1197s0001.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]