PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1178s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26718.4 Da PI: 9.7827 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.6 | 8.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtf+kRrng++KKA+ELSvLCdae+a+++fs++g+lyeys+ Kalax.1178s0002.1.p 9 KKIENPTNRQVTFCKRRNGLMKKAYELSVLCDAEIALMVFSNRGRLYEYSN 59 68***********************************************95 PP | |||||||
2 | K-box | 109.7 | 3.1e-36 | 77 | 174 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++s+ +++ ++a+ +qqe++kL+++i+ Lq+++Rhl+Ge+L+sL++keL+qLe++Le+++++iRskK+e+ll++ie+lqk+e el++e+ Kalax.1178s0002.1.p 77 STSSANTTVTNAQFYQQESTKLRQQIHLLQNTNRHLMGESLGSLNVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREMELENETI 166 45555689999******************************************************************************* PP K-box 93 aLrkklee 100 +Lr+k++e Kalax.1178s0002.1.p 167 CLRAKVAE 174 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.193 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.29E-42 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-32 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-28 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.555 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGRGKIEIKK IENPTNRQVT FCKRRNGLMK KAYELSVLCD AEIALMVFSN RGRLYEYSNN 60 NSIKSTIERY KKAYSDSTSS ANTTVTNAQF YQQESTKLRQ QIHLLQNTNR HLMGESLGSL 120 NVKELKQLEN RLERGITRIR SKKHEMLLAE IEYLQKREME LENETICLRA KVAEVERFQQ 180 ANMEAANQEF NTIQAYVARN FFQPDLLQGA DDGSHVNHFT HPDKKIIRLG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6bz1_A | 2e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6c9l_A | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 1 | 61 | 1 | 61 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614255.1 | 1e-123 | agamous-like MADS-box protein AGL11 isoform X1 | ||||
Swissprot | F6I457 | 1e-122 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A2H4L6S5 | 1e-125 | A0A2H4L6S5_CERJA; AGL11 | ||||
STRING | XP_006478206.1 | 1e-122 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 2e-99 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1178s0002.1.p |