PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1158s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 224aa MW: 25202.9 Da PI: 8.1818 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 236 | 8.4e-73 | 20 | 185 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae..shldeslkeelleelkveeenlksnvekees 91 s s+q+Cyv+Cn C+t+lavsvP ++lfk+vtvrCGhCt+llsvn++ aa ++ +++ ++ ++ + +ee++++++ +++ Kalax.1158s0001.1.p 20 PSLSDQLCYVHCNLCDTVLAVSVPGSCLFKTVTVRCGHCTNLLSVNMRGLLLPPAAPppHRHATNFFNNPHNLMAMEEMQTNMTLMNQLP 109 5789*******************************************9998544443103335556666777788888888888877766 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ + + ++e +p +pp++rPPekrqrvPsaynrfikeei+rika+nPdishreafsaaaknWahfP+ihfgl Kalax.1158s0001.1.p 110 NPNEQMM--MMPVQTEFMP-APPAVRPPEKRQRVPSAYNRFIKEEIRRIKAENPDISHREAFSAAAKNWAHFPHIHFGL 185 6655544..4455677777.7999*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-71 | 22 | 185 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.63E-9 | 130 | 178 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.7E-6 | 133 | 179 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.28E-6 | 139 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSSSSASSFS PDHHILHHTP SLSDQLCYVH CNLCDTVLAV SVPGSCLFKT VTVRCGHCTN 60 LLSVNMRGLL LPPAAPPPHR HATNFFNNPH NLMAMEEMQT NMTLMNQLPN PNEQMMMMPV 120 QTEFMPAPPA VRPPEKRQRV PSAYNRFIKE EIRRIKAENP DISHREAFSA AAKNWAHFPH 180 IHFGLLPDQS VRRSGSNLLP QEYYPSFRAA QTHKGEELLR EGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620627.1 | 1e-80 | axial regulator YABBY 1 | ||||
Swissprot | Q01JG2 | 5e-65 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 5e-65 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A2C9WPE7 | 3e-79 | A0A2C9WPE7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016451m | 4e-80 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1158s0001.1.p |
Publications ? help Back to Top | |||
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