PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1156s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 267aa    MW: 28903.9 Da    PI: 8.476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1156s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19129178255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +   r++lg+f  ae+Aa+a+++a+ k++g
  Kalax.1156s0007.1.p 129 HYRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFENAEDAARAYDRAAFKFRG 178
                          7********.**********7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-32128186IPR001471AP2/ERF domain
CDDcd000182.77E-21129187No hitNo description
SMARTSM003807.8E-40129192IPR001471AP2/ERF domain
PROSITE profilePS5103224.764129186IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22129187IPR016177DNA-binding domain
PfamPF008473.2E-12129178IPR001471AP2/ERF domain
PRINTSPR003673.4E-11130141IPR001471AP2/ERF domain
PRINTSPR003673.4E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
METPFSRKAG APAAKQSPGF RITSDQEVAA MVAALTNVVT GGGGQPQPVQ SLSHTTTTSS  60
YSRESESGGS VWSISSGNDT CQFCRLRDCL GCNLFAPSLE AAEPVKSSKS RGKAAARKMK  120
KQSSQSFRHY RGVRQRPWGK WAAEIRDPHR AVRVWLGTFE NAEDAARAYD RAAFKFRGPR  180
AKLNFPYEDY SSALEQTSSD SAPQQQQCGS SSGQTSDPTV YPSMDFGAPE MWDFRGSDEE  240
MRHWMMSMEI ASGESSGSAS GNVHSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25128186463ATERF1
3gcc_A2e-25128186463ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-30redox responsive transcription factor 1