PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1140s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 19635.2 Da PI: 6.2575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r +r +lg+f t eeAa a++ a+ kl+g Kalax.1140s0001.1.p 38 CIYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSEEAATAYDSAAIKLYG 88 56*****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 38 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.29E-28 | 38 | 94 | No hit | No description |
PROSITE profile | PS51032 | 22.049 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 39 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-30 | 40 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MNVDDDNPPT PAAAAKPQTG RSRKGCARGK GGPENASCIY RGVRQRTWGK WVAEIREPNR 60 GARLWLGTFN TSEEAATAYD SAAIKLYGSA AKLNLLTLHQ HEHQNNTNAA TTTTTVGTAS 120 SSSGSNSNSD SISSGNYNNG GFGFGETTTS IGGFLGGGGG GGEESGGEFL YVNEFKDWDG 180 MQVPWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-18 | 40 | 95 | 6 | 62 | ATERF1 |
3gcc_A | 5e-18 | 40 | 95 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008389032.2 | 2e-44 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | P61827 | 1e-41 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
TrEMBL | A0A498IH69 | 4e-43 | A0A498IH69_MALDO; Uncharacterized protein | ||||
STRING | XP_008389032.1 | 9e-44 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 5e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1140s0001.1.p |
Publications ? help Back to Top | |||
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