PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1139s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | RAV | ||||||||
Protein Properties | Length: 352aa MW: 38765.5 Da PI: 10.1266 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.2 | 3.5e-12 | 73 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAa+ ++ a+++++g Kalax.1139s0002.1.p 73 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARVYDIAAQRFRG 121 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99.8 | 1.6e-31 | 195 | 297 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + + +++ l +ed gr+W+++++y+++s++yvlt+GW++Fvk+++L++gD+v F+ Kalax.1139s0002.1.p 195 FEKAITPSDVGKLNRLVIPKQHAEKHfplqsgSPASSKGVLLNFEDAGGRVWRFRYSYWNSSQSYVLTRGWSRFVKEKNLRAGDVVSFYK 284 89**************************99762233478999***********************************************6 PP -SS.SEE..EEEE CS B3 85 dgr.sefelvvkv 96 + ++++l++ + Kalax.1139s0002.1.p 285 STGaTDRQLHIDF 297 6444777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.07E-23 | 73 | 128 | No hit | No description |
Pfam | PF00847 | 1.0E-6 | 73 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-16 | 73 | 129 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 74 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.454 | 74 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-28 | 74 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 190 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-30 | 194 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.50E-29 | 194 | 295 | No hit | No description |
PROSITE profile | PS50863 | 14.635 | 195 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-28 | 195 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 195 | 301 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDLNCSDDMT STATKDASSS SASSSLIIAP SPPLTLAALR VNPLCRMGSG ASVVIDTDNG 60 VEAESSGRKL VSSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR VYDIAAQRFR 120 GRDAVTNFKP LKTDEAGSAE YSFLTSRSKS EIVDMLRKHT YAEELEQSKR HSGSDTNKPD 180 PRSSPGSGPA REQLFEKAIT PSDVGKLNRL VIPKQHAEKH FPLQSGSPAS SKGVLLNFED 240 AGGRVWRFRY SYWNSSQSYV LTRGWSRFVK EKNLRAGDVV SFYKSTGATD RQLHIDFKSR 300 VGVIASASKP SPITPLDNIV RLFGVNIGKS SNERPREMEL LGFESCKRRR G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-56 | 192 | 311 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022776993.1 | 1e-149 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-134 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A061EB30 | 1e-147 | A0A061EB30_THECC; AP2 domain class transcription factor | ||||
STRING | EOY02136 | 1e-148 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-133 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1139s0002.1.p |
Publications ? help Back to Top | |||
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