PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1120s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24083.9 Da PI: 7.075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.3e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dPvyG++++i++lqqq+ + Kalax.1120s0006.1.p 7 PCGACKFLRRKCLKGCVFAPYFCHEQgASQFAAIHKVFGASNVSKLLAHLPVSDRSEAALTISYEAQARVHDPVYGCISHIFALQQQVVN 96 7*************************89************************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+lk++ Kalax.1120s0006.1.p 97 LQAQLAYLKQQ 107 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTGSSSPCGA CKFLRRKCLK GCVFAPYFCH EQGASQFAAI HKVFGASNVS KLLAHLPVSD 60 RSEAALTISY EAQARVHDPV YGCISHIFAL QQQVVNLQAQ LAYLKQQGGQ GQFNGTNSST 120 NPNWCHQLPG NNPILHHQNQ QTQVFNQTNL THLMNMASME SSENSISSRQ NQVVGPYSCS 180 YDETNSQTLD EIDERKWGFE DADDLRSVAF RYMHHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021814837.1 | 3e-80 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 4e-65 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | M5VHN0 | 4e-78 | M5VHN0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ00589 | 7e-79 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-51 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1120s0006.1.p |
Publications ? help Back to Top | |||
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