PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1120s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 28780.7 Da PI: 9.7998 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H+++H Kalax.1120s0002.1.p 70 YTCSFCTRRFKSAQALGGHMNVH 92 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-6 | 67 | 96 | No hit | No description |
Pfam | PF13912 | 5.2E-6 | 69 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.741 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MVRKSSSNSS SCKYMEKVAM KSSSEAEELS DGDKNKKLKD KLCYRGGGGT SAGVVIEDAD 60 LLASWPPRYY TCSFCTRRFK SAQALGGHMN VHRRARAILR SQSISPIPSP PSSPWLIPNT 120 IITPAHHQPL QGDNHHFILA NPNRPHWPLS IPHHTSNISS HSYLSRLPMI TSITSSCSST 180 CTPKNPLFAA AAYKHVPDSL LFHTGERAKK SCVWAESKFN GGLNSRTHQD DAVMRLSLGT 240 GGLITRRSAA DEDIDLELRL GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-11 | 65 | 92 | 2 | 29 | superman protein |
2l1o_A | 8e-11 | 65 | 92 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 7e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1120s0002.1.p |