PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1113s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 142aa MW: 15613.3 Da PI: 8.4384

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1113s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.9	7.9e-21	17	67	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd n++ r++lg+f+ta eAa+a+++a+ +++g+ Kalax.1113s0006.1.p 17 YRGVRRRP-WGKYAAEIRDS--NNQGVRVWLGTFDTALEAARAYDQAAYNMRGA 67 9*****.******4..2345***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.84	16	74	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-15	16	66	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-31	16	76	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-32	16	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-11	17	28	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-22	17	75	IPR016177	DNA-binding domain
CDD	cd00018	6.30E-27	17	74	No hit	No description
PRINTS	PR00367	5.9E-11	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDSSNHVRNS RGGEVSYRGV RRRPWGKYAA EIRDSNNQGV RVWLGTFDTA LEAARAYDQA 60 AYNMRGAMAV LNFPKEYKLT PNGAVNNNAA SSSGPGRTKE VIEFECLDDQ VLEDMLAWDD 120 GPNGFGHVYS RGVQNPVRTA K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-33	16	123	14	126	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733438.1	2e-45	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	3e-33	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A2J6KGH7	4e-44	A0A2J6KGH7_LACSA; Uncharacterized protein
STRING	XP_009621246.1	2e-39	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	7e-35	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.1113s0006.1.p

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]