PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1099s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 265aa    MW: 30141.8 Da    PI: 9.5138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1099s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.21.8e-2947139187
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k ltpsdv+k++rlv+pk++ae++       g +  ++  l++ede g++W+++++y+ +s++yvltkGW+++vk++gL +gD+v F+
  Kalax.1099s0007.1.p  47 FEKPLTPSDVGKLNRLVIPKQYAEKYfplrspcGTNA-GESLLSFEDEFGKVWKFRYSYWTSSQSYVLTKGWSRYVKEKGLTAGDIVSFQ 135
                          99******************************86665.4459************************************************ PP

                          E-SS CS
                   B3  84 ldgr 87 
                          +++ 
  Kalax.1099s0007.1.p 136 RQQY 139
                          6543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-3638154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-2844140IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-2646136No hitNo description
PROSITE profilePS5086314.53647154IPR003340B3 DNA binding domain
SMARTSM010191.1E-2147155IPR003340B3 DNA binding domain
PfamPF023621.5E-2647140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSINPFCSSS SPSHSLDHPS KEACFLSVVQ DHTDSDGAAN IHRTLLFEKP LTPSDVGKLN  60
RLVIPKQYAE KYFPLRSPCG TNAGESLLSF EDEFGKVWKF RYSYWTSSQS YVLTKGWSRY  120
VKEKGLTAGD IVSFQRQQYS SGDTDRLFMT WRTRAHNGTL LLRRKYNTSG DYWSRTNLFP  180
PHYPYHPGRP MLNLWHNYSG GENKMVPISK NSRRLRLFGV NMELEDQSKP SDGVVSSQAS  240
GLLNRDASAA NQLHQFYPDL HVFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-43431584117B3 domain-containing transcription factor NGA1
5os9_B4e-43431584117B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.24e-56PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8RYD31e-47Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A438EK289e-55A0A438EK28_VITVI; B3 domain-containing protein
TrEMBLF6HKN62e-55F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t013e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.15e-50B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]