PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1096s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 360aa MW: 39258.9 Da PI: 9.2921

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1096s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.1	1e-28	52	100	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++keClkNhAaslGgha+DGCgEfmps +a+ +kCaACgCHRnFHR+e Kalax.1096s0013.1.p 52 PVFKECLKNHAASLGGHALDGCGEFMPS-----SAEPMKCAACGCHRNFHRQEA 100 579**********************9.....6789************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.2E-24	53	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-16	53	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.784	54	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-25	54	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.02E-15	231	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-26	233	303	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.1E-23	242	299	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDLVDHSGYN PNPFAPKPDP ATSQKIPQQD VVAKTLSFAS YTPTLPPHAV EPVFKECLKN 60 HAASLGGHAL DGCGEFMPSS AEPMKCAACG CHRNFHRQEA AAPPIHHRDP PPLPPPPSMP 120 MVGVTPPHFS LLPRRFSSSP STSPSPSPPR RLNPPPPPPP PPAAAGSLQQ YSPGPHMLMA 180 LSTGKAASPP PPDHHRQRST PTSSPPTRHS KQTSHHHQTR RNPNPDPNPT RKPDNSNPAA 240 KRKRFRSKFS DEQKEKMRRF ADALNWKMQK NDEKLVADFC ADVGVSKGVL KVWMHNNKNT 300 AGKIPRTSNN NSNHSSSYNN MEDDDPDHQQ VHVNDDNYEL GLGVDHHHLL GNNGSCCSG*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDLVDHSGYN PNPFAPKPDP ATSQKIPQQD VVAKTLSFAS YTPTLPPHAV EPVFKECLKN  60
HAASLGGHAL DGCGEFMPSS AEPMKCAACG CHRNFHRQEA AAPPIHHRDP PPLPPPPSMP  120
MVGVTPPHFS LLPRRFSSSP STSPSPSPPR RLNPPPPPPP PPAAAGSLQQ YSPGPHMLMA  180
LSTGKAASPP PPDHHRQRST PTSSPPTRHS KQTSHHHQTR RNPNPDPNPT RKPDNSNPAA  240
KRKRFRSKFS DEQKEKMRRF ADALNWKMQK NDEKLVADFC ADVGVSKGVL KVWMHNNKNT  300
AGKIPRTSNN NSNHSSSYNN MEDDDPDHQQ VHVNDDNYEL GLGVDHHHLL GNNGSCCSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-20	243	301	18	76	ZF-HD homeobox family protein

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-23	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Kalax.1096s0013.1.p