PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1096s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 189aa    MW: 20426.6 Da    PI: 4.9155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1096s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.5e-164088255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r  ++  +Wv+eIr+p++   ++r++lg++ tae+Aa+a++aa+++l+g
  Kalax.1096s0010.1.p 40 IYRGIR--SRGPKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDAAALALKG 88
                         699**6..5678********854...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-93988IPR001471AP2/ERF domain
CDDcd000183.03E-133997No hitNo description
SMARTSM003801.1E-2740102IPR001471AP2/ERF domain
PROSITE profilePS5103219.4014096IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-174096IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-264097IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDENSEAARA NLRRTDTPPN HHGDQQRARA HSSWKHTHPI YRGIRSRGPK WVSEIREPKK  60
TTRIWLGTYP TAEMAAAAYD AAALALKGSD AVLNFPECAG AYPVPDSLSA ADVRAAAEAA  120
AATRAPPQPI NEEVQHGGEY VDEDVILDMP NFLADMAEGM MVSPPRMRPA DDDDNTGEGS  180
SSGLWDHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1238961272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022892142.17e-54ethylene-responsive transcription factor ERF025
SwissprotQ9FJ905e-42ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8NDA22e-51A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
TrEMBLB9GW617e-52B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.11e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-33ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]