PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1096s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 392aa    MW: 44112.2 Da    PI: 7.5464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1096s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-15144189147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Kalax.1096s0009.1.p 144 RGHWRPAEDAKLKELVAFYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 189
                          899*****************************.***********996 PP
2Myb_DNA-binding51.52.2e-16196239146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r +++++E+e+l  a++ +G++ W+ Iar ++ gRt++++k++w+ 
  Kalax.1096s0009.1.p 196 RRAFSEDEEERLMVAHRAYGNK-WAMIARLFP-GRTDNSVKNHWHV 239
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.223139190IPR017930Myb domain
SMARTSM007179.7E-14143192IPR001005SANT/Myb domain
SuperFamilySSF466893.03E-27144241IPR009057Homeodomain-like
PfamPF002493.8E-15144189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-25145197IPR009057Homeodomain-like
CDDcd001677.45E-13147188No hitNo description
PROSITE profilePS5129424.693191245IPR017930Myb domain
SMARTSM007178.1E-13195243IPR001005SANT/Myb domain
PfamPF002492.7E-13196238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-20198244IPR009057Homeodomain-like
CDDcd001673.82E-10198238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MKAMANNKCV IPPGFYADSS FTNGGGVGLI SHYHHHHHHH NPSMGLMFQG MGSLSLDLNS  60
SSNPPSSQES LASKRPDKQM EFPASEAGEE NCKGSSDYSD DRVCGSSREF VDLNASLVED  120
DTETTCHGNN KDAAESGPSK FFTRGHWRPA EDAKLKELVA FYGPQNWNLI AEKLEGRSGK  180
SCRLRWFNQL DPRINRRAFS EDEEERLMVA HRAYGNKWAM IARLFPGRTD NSVKNHWHVI  240
MARKYREQST AYRRRKLSQT IYRKIEDQQN PTPPPPPPYT GFCLPHPAHP FSPNSFAVPA  300
SYNNCNNSVL LHAHHLHHQQ QQLSFELISG SKNRDMMMYM MMFDGPSYTH QNQQQADNNI  360
NQISPDPHNS SPAPPPPQPP LFIDFLGVGA M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-311422445107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618770.15e-94PREDICTED: myb-like protein Q
TrEMBLA0A0B0NX306e-93A0A0B0NX30_GOSAR; Transcription factor MYB44-like protein
STRINGGorai.013G086400.15e-92(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-74myb domain protein 105