PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1088s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 778aa    MW: 85105.5 Da    PI: 6.4838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1088s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.31.3e-1274077662374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs+++le+a+++L ++s+l++p g++ qR+aayf eA+++rl++s+ ++y++lp++  ++++++ + +a+++f+ +sP++
  Kalax.1088s0005.1.p 407 LTLLLQCAEAVSADNLEEANQMLLEISQLSTPFGTSAQRVAAYFSEAMSSRLVSSCLGIYRSLPATVLPHYTHKMVSSAFQVFNGISPFV 496
                          579*************************************************************************************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Kalax.1088s0005.1.p 497 KFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP- 581
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l+le+L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl
  Kalax.1088s0005.1.p 582 VAEKIGNLDLEKLNISRREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSL 664
                          7*************************9..999999999999....**********************.899******************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           a++ +eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++e+GF+ ++l  +aa+qa lll +++ dgy++ e+sg+l lg
  Kalax.1088s0005.1.p 665 GASYDEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FQNWREKFQESGFRGISLAGNAATQATLLLGMFPCDGYTLVEDSGTLKLG 753
                          *********************************888776.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Kalax.1088s0005.1.p 754 WKDLCLLTASAWR 766
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.831380746IPR005202Transcription factor GRAS
PfamPF035144.5E-125407766IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MSATTCSDPS NSAPVTDDIV SSSAANNQPH PKMLRKRTAS DLNSSSNTLY HQQHRFPRRI  60
SQDHAGNDSG VAPDRNPSFD SVLDCSGFQR PPAAAAAIAT TTLVPNNNHS TSLSVTLPMT  120
STLTSLTQLA PPPDASSSSS LSHHHLLPPP PSALPAVCNF SGLPLFPPQH HHYHHLQRPI  180
PPAPDSSMDD SRSSTAWIDG IIKDLIHSSS ASVSIPQLIH NVREIIFPCN PTLAAQLEHR  240
LRFLTESAAS RLPEMPVRKD AVAVQSPLLP PPPRQQYQHH QQQHHLLLDG SAHHLPYDTV  300
IVPSQITAAH SQPSNWGAAA LPAPPPPPPH QQSCNDQNTV TNLPNPRQQS EQSDERETSS  360
PSDPAGSVVT PSPTETAPSP TAALASYKQM KEEARQRQRD EEGLHLLTLL LQCAEAVSAD  420
NLEEANQMLL EISQLSTPFG TSAQRVAAYF SEAMSSRLVS SCLGIYRSLP ATVLPHYTHK  480
MVSSAFQVFN GISPFVKFSH FTANQAIQEA FEREDRVHII DLDIMQGLQW PGLFHILASR  540
PGGPPFVRLT GLGTSMEALE ATGKRLSDFA DKLGLPFEFF PVAEKIGNLD LEKLNISRRE  600
AVAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF VEAIHYYSAL  660
FDSLGASYDE ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFQNWREK FQESGFRGIS  720
LAGNAATQAT LLLGMFPCDG YTLVEDSGTL KLGWKDLCLL TASAWRPYQP NPHYYVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03917674380Protein SCARECROW
5b3h_A0.03917673379Protein SCARECROW
5b3h_D0.03917673379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463324.20.0PREDICTED: protein SCARECROW 1
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1S3CJ050.0A0A1S3CJ05_CUCME; protein SCARECROW 1
STRINGXP_004163982.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein