PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1087s0007.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 417aa MW: 46749.5 Da PI: 7.2025 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.7 | 1.2e-12 | 85 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d ++n+ k+k + g +g +e Aa a++ a++k++g Kalax.1087s0007.3.p 85 TFRGVTRHRWTGRYEAHLWDkNCWNQsqKKKGKQ-GAYGDEEAAAHAYDLAALKYWG 140 69******************99999994446666.99******************98 PP | |||||||
2 | AP2 | 51.9 | 1.9e-16 | 183 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg+f t eeAa+a++ a+ +++g Kalax.1087s0007.3.p 183 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAEAYDMAAIEYRG 234 89****99**********988422...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-14 | 84 | 150 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.767 | 85 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 85 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-18 | 85 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 86 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-8 | 86 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-23 | 183 | 244 | No hit | No description |
Pfam | PF00847 | 7.6E-12 | 183 | 234 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 183 | 244 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 184 | 243 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 184 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-27 | 184 | 248 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 224 | 244 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MPKLPHPDQN QMTRTNKDQM ESHNKKKKSE IKKDSADVIC TDNKLINIAA ALKVDAAVTN 60 KKKKQQPRRS RKAVPRDAPP QRTSTFRGVT RHRWTGRYEA HLWDKNCWNQ SQKKKGKQGA 120 YGDEEAAAHA YDLAALKYWG PQSILNFPLS TYEEELKGME DQSREEYIGS LRRKSSGFSR 180 GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL YLGTFATQEE AAEAYDMAAI EYRGLNAVTN 240 FDLSRYAKWL SCSHQEPNAH KSDCNLVSHN QLGHHQAADS SLFTSPAASL SENYTSEDAD 300 EAALMNNTTS ADQWGRRTQN SKEEEEFYPS YSNTTTTSAA ATLSSGEDSD SKSSSTVTNK 360 RFFPDDIQTI FECTQQESVS GMCAGTTDFI HIGSEDMIFG EAELSAYTSS LFDLDQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632327.1 | 1e-126 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2C9UNY0 | 1e-125 | A0A2C9UNY0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025233m | 1e-125 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 6e-88 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1087s0007.3.p |