PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1074s0008.7.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 376aa MW: 42607.6 Da PI: 8.9341

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1074s0008.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	9.4e-12	89	130	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k +rr+++NReAAr+sR+RKka++++Le +L++ ++L Kalax.1074s0008.7.p 89 EKSQRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEEEL 130 699**************************9777777666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-8	86	149	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-8	86	132	No hit	No description
PROSITE profile	PS50217	9.427	88	132	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-8	89	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.11E-7	90	131	No hit	No description
PROSITE pattern	PS00036	0	93	108	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-29	179	252	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MICAQFGYLL VGMSSTSTEF ATSRRSMGIY DPLHQMNMWK DTYVRPQTNI NTSEAILVPL 60 SDNKMKGDYS PRESFENLRT NLETSKPPEK SQRRLAQNRE AARKSRLRKK AYVQQLESSR 120 LKLSQLEEEL ERARSQGAYI GSALDSSHVG LFATVNPGVA AFEMEYAHWV EKQHEQTLEL 180 ENALQAQTIS DVKLKTLVDT ALIHYVNLFR MKGDAAKADV FYLMSGMWRT PAERFFLWIG 240 GFRPSELLNV LMPQLEPLSE QQHQSISKLR QSSQQAEDAL SQGIDRLKQT LSQSIAAPTV 300 GEGCYLSQMI GEIEKLDALE NFVSQADHLR QQTLKHMSRI LTTRQAARGL LALGEFFHRF 360 RALSSLWAAR ALEPF*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MICAQFGYLL VGMSSTSTEF ATSRRSMGIY DPLHQMNMWK DTYVRPQTNI NTSEAILVPL  60
SDNKMKGDYS PRESFENLRT NLETSKPPEK SQRRLAQNRE AARKSRLRKK AYVQQLESSR  120
LKLSQLEEEL ERARSQGAYI GSALDSSHVG LFATVNPGVA AFEMEYAHWV EKQHEQTLEL  180
ENALQAQTIS DVKLKTLVDT ALIHYVNLFR MKGDAAKADV FYLMSGMWRT PAERFFLWIG  240
GFRPSELLNV LMPQLEPLSE QQHQSISKLR QSSQQAEDAL SQGIDRLKQT LSQSIAAPTV  300
GEGCYLSQMI GEIEKLDALE NFVSQADHLR QQTLKHMSRI LTTRQAARGL LALGEFFHRF  360
RALSSLWAAR ALEPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285820.1	1e-166	PREDICTED: transcription factor TGA4
Refseq	XP_010664271.1	1e-166	PREDICTED: transcription factor TGA4
Refseq	XP_010664272.1	1e-166	PREDICTED: transcription factor TGA4
Refseq	XP_010664273.1	1e-166	PREDICTED: transcription factor TGA4
Refseq	XP_019072140.1	1e-166	PREDICTED: transcription factor TGA4
Swissprot	Q39237	1e-145	TGA1_ARATH; Transcription factor TGA1
TrEMBL	F6H0P0	1e-164	F6H0P0_VITVI; Uncharacterized protein
STRING	VIT_18s0001g04470.t01	1e-165	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-140	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.1074s0008.7.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]