PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1074s0008.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bZIP
Protein Properties Length: 377aa    MW: 42735.7 Da    PI: 8.9341
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1074s0008.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.9e-1191131545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + +rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Kalax.1074s0008.5.p  91 QSQRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEEEL 131
                          789*************************9777777666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-786150IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.27889133IPR004827Basic-leucine zipper domain
PfamPF001708.7E-891131IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.27E-793132No hitNo description
Gene3DG3DSA:1.20.5.1709.5E-893135No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
PfamPF141447.8E-29180253IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MICAQFGYLL VGMSSTSTEF ATSRRSMGIY DPLHQMNMWK DTYVRPQTNI NTSEAILVPL  60
SDNKMKGDYS PRESFENLRT NLETSKPPEK QSQRRLAQNR EAARKSRLRK KAYVQQLESS  120
RLKLSQLEEE LERARSQGAY IGSALDSSHV GLFATVNPGV AAFEMEYAHW VEKQHEQTLE  180
LENALQAQTI SDVKLKTLVD TALIHYVNLF RMKGDAAKAD VFYLMSGMWR TPAERFFLWI  240
GGFRPSELLN VLMPQLEPLS EQQHQSISKL RQSSQQAEDA LSQGIDRLKQ TLSQSIAAPT  300
VGEGCYLSQM IGEIEKLDAL ENFVSQADHL RQQTLKHMSR ILTTRQAARG LLALGEFFHR  360
FRALSSLWAA RALEPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285820.11e-165PREDICTED: transcription factor TGA4
RefseqXP_010664271.11e-165PREDICTED: transcription factor TGA4
RefseqXP_010664272.11e-165PREDICTED: transcription factor TGA4
RefseqXP_010664273.11e-165PREDICTED: transcription factor TGA4
RefseqXP_019072140.11e-165PREDICTED: transcription factor TGA4
SwissprotQ392371e-143TGA1_ARATH; Transcription factor TGA1
TrEMBLF6H0P01e-163F6H0P0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g04470.t011e-164(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-138bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]