PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1073s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 26729.9 Da PI: 7.7226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 83 | 103 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C+ C+k+F++ L H Kalax.1073s0007.1.p 83 YECKTCSKTFPSFQALGGHRA 103 99*********9888877765 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Kalax.1073s0007.1.p 157 HRCSVCGSEFTSGQALGGHMRRH 179 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.44E-7 | 82 | 105 | No hit | No description |
SMART | SM00355 | 0.29 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-10 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.44E-7 | 152 | 179 | No hit | No description |
Pfam | PF13912 | 2.4E-11 | 156 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.681 | 157 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MELPVDEVAA AAVVPGPLQN ISKGKRTKRS SGIASDEEED RRSYDSVVTE EEQDLANCLI 60 LLARAEVVVG AKRRIADVMG GCYECKTCSK TFPSFQALGG HRAGHGKPKS HIDDCDFAPS 120 SSSNCSVSPK PPTPPTTAAN RNDVVVAKSS TRLSKAHRCS VCGSEFTSGQ ALGGHMRRHR 180 AVPVPSRSPS AGPSSMGSGG ASSLEAKTRS FLSLDLNLPA PEDGEISQCQ QNAAFHQLET 240 HAFSTHALLG CHY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1073s0007.1.p |