PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1066s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 273aa MW: 29057.3 Da PI: 4.8593 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+Fs+ L H+r H Kalax.1066s0005.1.p 145 HECGICGKVFSTGQALGGHMRAH 167 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.67E-6 | 142 | 169 | No hit | No description |
Pfam | PF13912 | 1.9E-11 | 144 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 145 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.554 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MEGRNASSGS PSNVSEDHKR DGEDSSDRRG NNQERSSSDS SRHGGERRLN VDEIVITMIT 60 LVAIATSGNV VVHDQSWMTA AIVQSESFIP PPPPPPSAPA PAPAPTRVIN NNANNDAIPP 120 PEEGCSSGQS PPNKKRKRAE HQEVHECGIC GKVFSTGQAL GGHMRAHYPG HLSRTRHANS 180 NVAIASSAAS VAAPSSYSGA TINNNNNNNI NSEVDAEVND ESTVVEHNAA NESDRAASHP 240 RLDIDLNVKP AEMYEEPEEE NLEEEGHHSY GD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1066s0005.1.p |