PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1062s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 390aa    MW: 42525.1 Da    PI: 6.0573
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1062s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.8e-082859435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                         + C+++++  + lfC+ ++ +lC  C + +H 
  Kalax.1062s0005.1.p 28 KPCDLCKSASALLFCKPDSAFLCVACDTRIHA 59
                         67****************************93 PP
2zf-B_box26.21.7e-0869115242
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + ++C+ +e+ +++  C+ +   lC +C   +H+       H++vpl
  Kalax.1062s0005.1.p  69 RLWMCEVCEQVPASVTCKADAAALCVSCDADIHSAnplsrkHERVPL 115
                          5789*****************************66999999999986 PP
3CCT71.22.6e-24318361144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrFvk++
  Kalax.1062s0005.1.p 318 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFVKRT 361
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7552572IPR000315B-box-type zinc finger
SMARTSM003361.1E-112572IPR000315B-box-type zinc finger
PfamPF006431.8E-62868IPR000315B-box-type zinc finger
CDDcd000215.76E-82972No hitNo description
PROSITE profilePS5011910.72268115IPR000315B-box-type zinc finger
PfamPF006431.7E-670115IPR000315B-box-type zinc finger
CDDcd000211.66E-971115No hitNo description
SMARTSM003362.3E-973115IPR000315B-box-type zinc finger
PfamPF062032.6E-18318360IPR010402CCT domain
PROSITE profilePS5101716.797318360IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGIVVEENCV KGYPVVGGGL GVWPMAAKPC DLCKSASALL FCKPDSAFLC VACDTRIHAV  60
NKLASRHERL WMCEVCEQVP ASVTCKADAA ALCVSCDADI HSANPLSRKH ERVPLVPFFE  120
SAESIIKKSS AANAAAAKGN GSSNLVNFLV PGADEEEDHE DDVSWFIPPQ KAALTAAMDP  180
IEVKCAGVEL FYTDFDHLLD FENPNQLYLN FKNNQHVAGS DSVVPVQIKP EIVSGIGSSD  240
RCFDIDFCKS KLPFYNFDQS INHSVSSSSM DIALVPDGAS ASDISYSLGK HVNSGGGEAL  300
NINNSLATQA TQLTGLDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFVKR  360
TDPDQELDRM MFSGGSIDFF EGYGVVPSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928544.11e-133zinc finger protein CONSTANS-LIKE 5
RefseqXP_024928545.11e-133zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-102COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0L9TF491e-123A0A0L9TF49_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7U81e-123A0A0S3R7U8_PHAAN; Uncharacterized protein
TrEMBLB9T6181e-123B9T618_RICCO; Zinc finger protein, putative
STRINGXP_002533687.11e-123(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-97CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]