PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1055s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 165aa    MW: 18361.6 Da    PI: 6.9226
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1055s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.71.9e-4933128297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt++as+kc++ekrkt+ngdd++wal++lGf+dy+ + k yl++yr
  Kalax.1055s0009.1.p  33 KEQDHLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGDASHKCRKEKRKTLNGDDICWALGSLGFDDYAYATKRYLRRYR 122
                          79**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          +le+e+
  Kalax.1055s0009.1.p 123 DLESER 128
                          ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-4729143IPR009072Histone-fold
SuperFamilySSF471131.08E-3535143IPR009072Histone-fold
PfamPF008083.1E-2639102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-146684No hitNo description
PRINTSPR006151.4E-1485103No hitNo description
PRINTSPR006151.4E-14104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MADNTGSNVS ECSLKHTHEA ESSGTANREG VLKEQDHLLP IANVGRIMKQ ILPPNAKISK  60
EAKETMQECV SEFISFVTGD ASHKCRKEKR KTLNGDDICW ALGSLGFDDY AYATKRYLRR  120
YRDLESERAD QNRVGNNEQK DMEPPRNNPV AVSGTITSTI NFIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4232123192Transcription factor HapC (Eurofung)
4g92_B6e-4232123192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891930.12e-67nuclear transcription factor Y subunit B-4-like
SwissprotO822484e-53NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2N9ECM25e-65A0A2N9ECM2_FAGSY; Uncharacterized protein
STRINGGLYMA10G02480.13e-64(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]