PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1054s0002.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 444aa    MW: 48985.5 Da    PI: 6.4011
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1054s0002.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.16.1e-39148224177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cqv+gC++dls+ k+y++rh+vC v +k ++v+v+g+++rfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Kalax.1054s0002.3.p 148 TCQVQGCDMDLSSSKDYYKRHRVCPVDTKKAQVTVNGIQKRFCQQCSRFHLLDEFDEDKRSCRKRLAGHNRRRRKPR 224
                          6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-30143210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.419146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-36147226IPR004333Transcription factor, SBP-box
PfamPF031107.9E-30149222IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEFWGCDSEG YDLFSEDEEL DLGAEEPDRS GNMLFEFDLD SPFGLEEDPI IMDEQVMERY  60
LQMESGLSDL IAMSNPAAEN LGAGDGIFSG DDANVASPDC GLSSFSIPGG DGSSPDDISN  120
KISDVPNANS SLPEKRAHSE LSSSSKVTCQ VQGCDMDLSS SKDYYKRHRV CPVDTKKAQV  180
TVNGIQKRFC QQCSRFHLLD EFDEDKRSCR KRLAGHNRRR RKPRFENRIS RPHRFQPYQG  240
TRPHGQAAPP RRHLMSDLLP RRILFPDIYE QINGLRLQGG GSVYGPTPSD INTSRSHCLG  300
PEYYATPVRP SAVRNSSGVS DPCNALSLLS NQPQVSSPYF ASPVIVHGHN IFNRVSFPSP  360
HVFHPAGVNL CEAGQIAPRM APGYASPVGF MVSENHHRRP LCSNCSSCST CSGGRQPPEH  420
ASTVDLRQLS FNLTRVEHQR NVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-25143222584squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205222KRSCRKRLAGHNRRRRKP
2217223RRRRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-35SBP family protein