PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1052s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30991 Da    PI: 7.4783
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1052s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-261059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         rienk+ rqvtfskRr+g++KK +ELSvLCda++ +iifsstgk +ey++
  Kalax.1052s0005.1.p 10 RIENKTTRQVTFSKRRKGLMKKTHELSVLCDAQIGLIIFSSTGKKFEYCT 59
                         8***********************************************96 PP
2K-box67.54.5e-2380169998
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           e+ +  + ++e +++k+e++ L++++R + Ge+L+ Ls+++L+qLeq+Le s++kiR++Kn+l+ +q+++l +k + l++en +Lr  +
  Kalax.1052s0005.1.p  80 PEHDNRDEICKEWRRIKAETSALEQNLRLYNGEGLGFLSHQNLEQLEQHLEYSVNKIRARKNQLFEQQMDNLERKVQLLDQENSKLRDFI 169
                          566778899*****************************************************************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.572161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.50E-40278No hitNo description
SuperFamilySSF554551.16E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.5E-2181167IPR002487Transcription factor, K-box
PROSITE profilePS5129713.37585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRGKVEIRR IENKTTRQVT FSKRRKGLMK KTHELSVLCD AQIGLIIFSS TGKKFEYCTD  60
PLSMGHIIDE YLKCTGKRIP EHDNRDEICK EWRRIKAETS ALEQNLRLYN GEGLGFLSHQ  120
NLEQLEQHLE YSVNKIRARK NQLFEQQMDN LERKVQLLDQ ENSKLRDFIR EHETLAYQFH  180
DHQQVPGLEW KAPAAQAHLQ IQDNVRSSEL IDHRHQLMPF PAGNPELGGS GADNDHSTAL  240
QLAHLNNSYH PQVHSEPVSS LSDRLLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18162162MEF2C
5f28_B5e-18162162MEF2C
5f28_C5e-18162162MEF2C
5f28_D5e-18162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484520.12e-69protein TRANSPARENT TESTA 16
RefseqXP_024042551.12e-69protein TRANSPARENT TESTA 16
RefseqXP_024042552.12e-69protein TRANSPARENT TESTA 16
RefseqXP_024042553.12e-69protein TRANSPARENT TESTA 16
RefseqXP_024956637.12e-69protein TRANSPARENT TESTA 16
RefseqXP_024956638.12e-69protein TRANSPARENT TESTA 16
SwissprotQ9ATE51e-59FBP24_PETHY; MADS-box protein FBP24
TrEMBLV4TC415e-68V4TC41_9ROSI; Uncharacterized protein
STRINGXP_006437607.19e-69(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]