PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1036s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 520aa MW: 57957.2 Da PI: 4.7062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1036s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.4	7.1e-15	326	368	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + Er RRd++N+++ +L++l+P++ kK + a+i+e A+eYIk+L Kalax.1036s0004.1.p 326 ATERDRRDNLNNKYTTLKSLIPSP-----KKTDRASIVEDAIEYIKEL 368 78********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.383	319	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-12	321	370	No hit	No description
SuperFamily	SSF47459	5.24E-15	321	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	325	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-12	325	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-13	326	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MEHSRLLMQM IQTGTCVAMY EETACFDPNP IADEGAIQVI SNDLVSIPPH GNMESSIAIP 60 HFDFDENVKF PADEFFYKSS SKEDSMVPST NAVASSAFGT EFQQQMAYDV ENCCYGTESN 120 SLMQEAIHEV NQALSYEQSN WVASGDYEVQ DMCYSSENQQ QMLQDELVQN GQGIYTSSSV 180 LDVPHPSAPD LLHLLHLPRS PSSASFLPNS TISFVNASQS STNFQNGAGL MDAASSSAMF 240 YDPLLHLNLP PQPPIFKDLF QSLPHGFNLP VPMTGSLFAR MDEMERSRGL YHDVDGHLID 300 DGVLEFTADM PPQMVKGRNG KLKPFATERD RRDNLNNKYT TLKSLIPSPK KTDRASIVED 360 AIEYIKELTR TINELKVLVE KKRRVKERMK MLKTEASPDP ESSSDVKHNG ELNEPLRSSW 420 LQRKSKDTEV DVRIIDDELT VKLSQRKKAN CLLTMSKILE ELQLDLQHVS GGQVGDFYSF 480 FCNTKIGETS CVYAGGIAKR LIEGVERQQA GLGTNNISF*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MEHSRLLMQM IQTGTCVAMY EETACFDPNP IADEGAIQVI SNDLVSIPPH GNMESSIAIP  60
HFDFDENVKF PADEFFYKSS SKEDSMVPST NAVASSAFGT EFQQQMAYDV ENCCYGTESN  120
SLMQEAIHEV NQALSYEQSN WVASGDYEVQ DMCYSSENQQ QMLQDELVQN GQGIYTSSSV  180
LDVPHPSAPD LLHLLHLPRS PSSASFLPNS TISFVNASQS STNFQNGAGL MDAASSSAMF  240
YDPLLHLNLP PQPPIFKDLF QSLPHGFNLP VPMTGSLFAR MDEMERSRGL YHDVDGHLID  300
DGVLEFTADM PPQMVKGRNG KLKPFATERD RRDNLNNKYT TLKSLIPSPK KTDRASIVED  360
AIEYIKELTR TINELKVLVE KKRRVKERMK MLKTEASPDP ESSSDVKHNG ELNEPLRSSW  420
LQRKSKDTEV DVRIIDDELT VKLSQRKKAN CLLTMSKILE ELQLDLQHVS GGQVGDFYSF  480
FCNTKIGETS CVYAGGIAKR LIEGVERQQA GLGTNNISF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	385	KKRRVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028113214.1	1e-139	transcription factor bHLH91-like
Refseq	XP_028113215.1	1e-139	transcription factor bHLH91-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	8e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.1036s0004.1.p