PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.1025s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 475aa MW: 50789.2 Da PI: 8.7591 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.2 | 1.8e-38 | 125 | 184 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+cprC+s++tkfCyynny++ qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+s Kalax.1025s0014.1.p 125 PDRVLPCPRCNSMDTKFCYYNNYNVLQPRHFCKGCQRYWTAGGAMRNVPVGAGRRKSKNS 184 67889****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 122 | 182 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 127 | 183 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.435 | 129 | 183 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 131 | 167 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MLQLKDPAIK LFGKTIPYHS AAAWDADEFG GESVSVATSC SDNDRASSAG SEIGQADKEK 60 VSGARIVKGL KQQVEDESVN GSVSLETSEN QKTPSVNEET GKPKAGSSNI TEEANSKVKT 120 PLKKPDRVLP CPRCNSMDTK FCYYNNYNVL QPRHFCKGCQ RYWTAGGAMR NVPVGAGRRK 180 SKNSAFQNRF LTISEALQAS SAESPNGMVP GYPGLKRGSV LTIGSDATVS ASTCSVSNLK 240 EMPFLDPGSN LTYKVSEQVV TKSTKVGEIN SSGSCITASN EVESKQHGHG SFTPTFNSCL 300 TQIPCISAWP NPWTAGIPPP ALPHPGFALP FVPTAYWPCA AIPCSWNGSW VTPQPLPKTI 360 TDAGGIPNSK PPVLGKHSRD GEVLPKDSSV KQASPKQTSV LTPKTLRIDH PEEAAKSSIW 420 ETLGIKNETF SKGGLFRDLK PREADNIKLV PGNYAHLTSN PAALSRSLNF HEVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2I4FLS2 | 1e-116 | A0A2I4FLS2_JUGRE; cyclic dof factor 3-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-78 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.1025s0014.1.p |