PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1021s0008.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 132aa MW: 14741.7 Da PI: 10.1466

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1021s0008.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.9	2.2e-41	50	126	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C+ad+s+ak+yhrrhkvCe+h+k + ++v+gl+qrfCqqCsrfh +sefDe krsCrrrLa+hn+rrrk+++ Kalax.1021s0008.2.p 50 CQVENCTADMSDAKQYHRRHKVCEFHAKVQIAVVAGLQQRFCQQCSRFHLVSEFDEFKRSCRRRLAGHNQRRRKNTH 126 **************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	46	111	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.616	47	124	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.11E-37	49	126	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-30	50	123	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MRPGECAYGK GSVSGPTGHD TVRSSSSSTG WTPVPQHQLP PRNPQPLSLC QVENCTADMS 60 DAKQYHRRHK VCEFHAKVQI AVVAGLQQRF CQQCSRFHLV SEFDEFKRSC RRRLAGHNQR 120 RRKNTHACPA G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-36	47	123	8	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057392.1	2e-42	PREDICTED: squamosa promoter-binding-like protein 3
Refseq	XP_021291050.1	5e-42	squamosa promoter-binding protein 1-like isoform X1
Swissprot	Q38741	5e-39	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A059C8J5	4e-41	A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein
STRING	XP_010057392.1	6e-42	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	7e-41	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Kalax.1021s0008.2.p

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]