PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1021s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 177aa MW: 20001.1 Da PI: 6.9226 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.7e-41 | 95 | 171 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C+ad+s+ak+yhrrhkvCe+h+k + ++v+gl+qrfCqqCsrfh +sefDe krsCrrrLa+hn+rrrk+++ Kalax.1021s0008.1.p 95 CQVENCTADMSDAKQYHRRHKVCEFHAKVQIAVVAGLQQRFCQQCSRFHLVSEFDEFKRSCRRRLAGHNQRRRKNTH 171 **************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-32 | 91 | 156 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.616 | 92 | 169 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-37 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-30 | 95 | 168 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDRRRDEGVR RSFKEEPVFG EDEELVEGGN EDAEDEDYDV ESLLDMRPGE CAYGKGSVSG 60 PTGHDTVRSS SSSTGWTPVP QHQLPPRNPQ PLSLCQVENC TADMSDAKQY HRRHKVCEFH 120 AKVQIAVVAG LQQRFCQQCS RFHLVSEFDE FKRSCRRRLA GHNQRRRKNT HACPAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-35 | 92 | 168 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057392.1 | 3e-42 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A059C8J5 | 7e-41 | A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein | ||||
STRING | XP_010057392.1 | 1e-41 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-40 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1021s0008.1.p |