PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1020s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 445aa MW: 48627 Da PI: 7.8483 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2e-40 | 173 | 250 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls k+yhr+h++Ce hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+++ Kalax.1020s0009.1.p 173 RCQVEGCNVDLSGSKDYHRKHRICESHSKCPKVIVGGLERRFCQQCSRFHKLSEFDEKKRSCRKRLSDHNARRRKPRS 250 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-33 | 166 | 235 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.385 | 171 | 248 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.94E-37 | 172 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.2E-32 | 174 | 247 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MWDTGSSLQF DWENLVMLDG KGNQVPLKLN SSVWGSDIDG IHLHSHACDF GSINGFSGLD 60 AAHVSSVSSK STSADSSSLG KTSIISVFDE SRSVSIAVDF AKSKNPAAAS SVSVEASGGS 120 VEPVIGLKLG KRTYFEDFCS ASNAKTLTVS DKPLSSASSR RSGSSHQTMQ SLRCQVEGCN 180 VDLSGSKDYH RKHRICESHS KCPKVIVGGL ERRFCQQCSR FHKLSEFDEK KRSCRKRLSD 240 HNARRRKPRS EARHFNLDGK QQVGFVFNMP PCHQARPTLS PWETCGSKFT LTRDYYPFSE 300 KRTAGADHHQ YLLGNRISNT VSIQLYNNEG SPSQCATHEF LDDGAGECIT PSNIAAAQDL 360 RSAPSLLSTN GMGSCNSDPV PIYHQPNNVF QQPETRAVLH LASPQIWGSE PHPSDSPAPL 420 VGFQSNLRPY SETFDLSFGE NQPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-26 | 174 | 247 | 11 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 246 | KKRSCRKRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-60 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1020s0009.1.p |