PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1005s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 262aa MW: 28813 Da PI: 5.4093 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.7 | 3e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.1005s0012.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.37E-19 | 4 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.1E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL KEVVNKVPDY NHSSTSGEVR AISRRRKAAG DELSDSDEHS 120 KRSRLQETSH GTVGGKGRGR GCGRGRGRVG HMAGPDSVQH DFEPEPSMAN LDANDNKSRD 180 LASDSKEDDD GLTNLAVGKF DLNTEFKENN SMPALAIPDN LSAHPDNLQL SLSEMDRIEF 240 NTLQLGSMNS TFDDEDYDED G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-21 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432367.1 | 2e-77 | dr1-associated corepressor isoform X1 | ||||
Refseq | XP_006471322.1 | 3e-77 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | V4SXS0 | 5e-76 | V4SXS0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471322.1 | 1e-76 | (Citrus sinensis) | ||||
STRING | XP_006432367.1 | 9e-77 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-66 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1005s0012.1.p |