PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1002s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 526aa    MW: 59113.1 Da    PI: 6.5137
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1002s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.1e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Kalax.1002s0002.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                         ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-8155IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-11644No hitNo description
CDDcd002022.46E-16653No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.3E-9292373IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPLHA RAEELDEYED  60
YKASRVRVAN VNKPKEVKLQ KRKRNRNSDV VELGGDFHNY SHSHRRFVDD DTSNRSSSGS  120
GVSNSESFGP FSSTVGSDLT GPEQSVGWEA TVPSKKRTCF GRSKPSPIEK FTQELYTIWQ  180
EQQSYCPESP EEELLYESET PMVSVEIGHG SVLIKHPSEI AHEEDSEASS LSAEVKPYPR  240
TEAHLRPATL FVHKEDKGAA AFQAPRAVKN IRISNPPLMN REQSYRNEDA NVHDIQHLLG  300
RRDSPLCSVD LNDIVNLEEF AAQFTTQEQQ QLLKYLPKSD VERYPISLKS LFDDPLFQES  360
LLSFQRLLAE GVFDLSFPNV EPDDCRNLRR LALSNPLKPN WVALYNLLKK SKTRPAAHNV  420
TGSNVMELAK LSQKSQKSGS KLLPKDLNTV KLKHTTQAKE FADTDITSFH PKNIFAPPSE  480
NSVSPVTQPL HDADMEDDQD LLLDVPSNYA FPQAELLDPN QCLYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385556.11e-175GATA transcription factor 26 isoform X1
TrEMBLA9PFA91e-174A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-83GATA transcription factor 26