PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0983s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 413aa    MW: 45989.2 Da    PI: 6.4634
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0983s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.5e-073493812254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Kalax.0983s0005.1.p 349 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 381
                          69*****************************87 PP
2ELK29.31.9e-10302323122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Kalax.0983s0005.1.p 302 ELKHELKQGYKDKIVDIREEIL 323
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-17137181IPR005540KNOX1
PfamPF037903.3E-16139180IPR005540KNOX1
SMARTSM012562.6E-26190245IPR005541KNOX2
PfamPF037918.8E-19195244IPR005541KNOX2
SMARTSM011885.1E-4302323IPR005539ELK domain
PROSITE profilePS512139.969302322IPR005539ELK domain
PfamPF037891.4E-5302323IPR005539ELK domain
PROSITE profilePS5007111.483322385IPR001356Homeobox domain
SuperFamilySSF466892.44E-15324387IPR009057Homeodomain-like
SMARTSM003893.0E-9324389IPR001356Homeobox domain
CDDcd000861.09E-10325386No hitNo description
Gene3DG3DSA:1.10.10.603.9E-24329387IPR009057Homeodomain-like
PfamPF059201.4E-17342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAYQSSRNHM LSEMDQLQQF SERQMSENGS VVHNHPHAVV SGGGGPTWLS TAVIQQHSHH  60
QYAAAADNNN SNNFQLHLQT NSDSSNSPAT TGTNRWMSPE AKIGIGGGSG GGGSFRKEEE  120
MAMIVSEYGG VINWEKARFK AEILSHPLYE QLLAAHVSCL RIATPVDQLP QIDVQLAQSH  180
NLVAKYADAV QGSCVDDKEL DQFMTQYVLL LNSFKEQLQQ HVRVHAMEAV MACWELEQAL  240
QNLTGVSPGE GTGATMSDDE DDRAEGELNM FEGGMDCSDS MGLGPLVPTD SERSLMERVR  300
QELKHELKQG YKDKIVDIRE EILRKRRAGK LPGDTTSHLK AWWRSHSKWP YPTEEDKARL  360
VQETGLQLKQ INNWFINQRK RNWHSNSSTA TASKSKRKSN AGTTSSNNEP FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727870.0EU272787.1 Kalanchoe x houghtonii class 1 knox protein (KN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027903510.11e-170homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB1P3790.0B1P379_9MAGN; Class 1 knox protein
STRINGXP_007136985.11e-166(Phaseolus vulgaris)
STRINGGSMUA_Achr7P05170_0011e-167(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-156KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]