PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0982s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 355aa MW: 38255.1 Da PI: 9.0108

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0982s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.1e-39	41	102	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k+++++cprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Kalax.0982s0003.1.p 41 KDQIVNCPRCNSVNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNRRSSS 102 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	37	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	42	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDDSSTQWPQ GIGVVKVVDH HQNAGSVDQQ QKRTTLGRPQ KDQIVNCPRC NSVNTKFCYY 60 NNYSLSQPRY FCKTCRRYWT AGGSLRNVPV GGGSRKNRRS SSSSAAAAQS SSQVQGVAKL 120 SSPSSSSLHH QGHDLKLSFP PHPTTHDDIH HHYSNNTNPT FITKPNFSID QFSCGKLLLA 180 HLPNPNSSTN MTPLLPSMGL FKNPAVAVGN DDSRETTMII PPDHQHAISN SSSASIFRSV 240 GFPPIHQDQL LFKPGSINFS LDGFSRDGDG YAASSLQLGV QQQNNDGSTA TGARLLFPFN 300 QENLNKQQAQ SAAVAAPASR DDAQFDHQQN RASSVQGDGS GAGFWTGMLG GGSW*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDDSSTQWPQ GIGVVKVVDH HQNAGSVDQQ QKRTTLGRPQ KDQIVNCPRC NSVNTKFCYY  60
NNYSLSQPRY FCKTCRRYWT AGGSLRNVPV GGGSRKNRRS SSSSAAAAQS SSQVQGVAKL  120
SSPSSSSLHH QGHDLKLSFP PHPTTHDDIH HHYSNNTNPT FITKPNFSID QFSCGKLLLA  180
HLPNPNSSTN MTPLLPSMGL FKNPAVAVGN DDSRETTMII PPDHQHAISN SSSASIFRSV  240
GFPPIHQDQL LFKPGSINFS LDGFSRDGDG YAASSLQLGV QQQNNDGSTA TGARLLFPFN  300
QENLNKQQAQ SAAVAAPASR DDAQFDHQQN RASSVQGDGS GAGFWTGMLG GGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0982s0003.1.p