PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0981s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HSF | ||||||||
Protein Properties | Length: 315aa MW: 34681.5 Da PI: 4.6848 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.7 | 2.5e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d+++++lisw+e+g+ f+++ + efa+++LpkyFkh+n++SFvRQLn+YgF+kv ++ weF+++ F+kg+k Kalax.0981s0008.1.p 25 FLTKTYQLVDDPAVDDLISWNEDGSGFIIWRPAEFARDLLPKYFKHNNLSSFVRQLNTYGFRKVVPDR---------WEFANDCFRKGEK 105 9*****************************************************************99.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 ll++i+r+k + Kalax.0981s0008.1.p 106 GLLRDIQRRKMS 117 *********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.1E-58 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.0E-36 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.16E-35 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.6E-31 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 2.4E-4 | 174 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGMPAEQTG ESPAGEMQRA LPTPFLTKTY QLVDDPAVDD LISWNEDGSG FIIWRPAEFA 60 RDLLPKYFKH NNLSSFVRQL NTYGFRKVVP DRWEFANDCF RKGEKGLLRD IQRRKMSQLV 120 ATSPAVTPAV TLPPSTVQLV QISPSNSGEE QMFSSTSSPG GTVLRQVINS TTPELVEENE 180 RLKKENEQMT NELSHLRGLC NNIFVLMSNY GPSGQQDAGN PSMESKQLDL LQSGRFSEEQ 240 GGSSGGGAGA LDDKEVDEDT SPKLFGVSIG AKRMRRCEET ESSERHQQQR ADSQTENNNA 300 QSDMKLEPSQ SGPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 25 | 117 | 20 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476067.1 | 1e-120 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Refseq | XP_012476068.1 | 1e-120 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Swissprot | Q9T0D3 | 2e-91 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A0D2R1D0 | 1e-119 | A0A0D2R1D0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G208800.1 | 1e-119 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-93 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0981s0008.1.p |
Publications ? help Back to Top | |||
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